myRT

myRT report for GCA_001688965.2_ASM168896v2

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Seq: CP015404.2 Erysipelotrichaceae bacterium I46 chromosome, complete genome (4468297 bp)
Overview 1 RT 1: 1919435-1923128 bp 2 RT 2: 2191630-2197134 bp 3 RT 3: 3415694-3419389 bp 4 RT 4: 3430394-3436262 bp 5 RT 5: 4375305-4380561 bp 6 RT 6: 4386642-4391091 bp Neighborhood of RT #1 [1919435, 1923259] RPOL9 RPOL9 Y2_Tnp RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp KOG3882 Neighborhood of RT #2 [2191630, 2197217] Polyketide_cyc2 DUF2992 RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #3 [3415694, 3419389] IS285 RVT-GII Neighborhood of RT #4 [3430394, 3436262] PrgI VirB4_CagE VirB4_CagE AAA_10 RVT_N RVT-GII GIIM VirB4_CagE Neighborhood of RT #5 [4375305, 4380587] HTH_3 Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc PRK10095 Neighborhood of RT #6 [4386642, 4391099] Lysozyme_like Spr RVT-GII Intron_maturas2 HNHc TpcC Feature: gene Location: 1919435-1919644 bp Ori: ANU69090.1 Feature: domain Description: RPOL9 Location: 1919480-1919525 bp Feature: domain Description: RPOL9 Location: 1 91 9480-1 91 9525 bp Feature: domain Description: RPOL9 Location: 1919585-1919621 bp Feature: domain Description: RPOL9 Location: 1 91 9585-1 91 9621 bp Feature: gene Location: 1919586-1920057 bp Feature: domain Description: Y2_Tnp Location: 1919589-1919814 bp Feature: domain Description: Y2_Tnp Location: 1 91 9589-1 91 981 4 bp Feature: gene Location: 1920636-1921907 bp Ori: ANU69091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1920891-1921560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 920891 -1 921 560 bp Feature: domain Description: GIIM Note: maturase Location: 1921650-1921845 bp Feature: domain Description: GIIM Note: maturase Location: 1 921 650-1 921 845 bp Feature: gene Location: 1922132-1922641 bp Ori: ANU69092.2 Feature: domain Description: Zn_Tnp_IS91 Location: 1922141-1922339 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 9221 41 -1 922339 bp Feature: domain Description: Y2_Tnp Location: 1922471-1922573 bp Feature: domain Description: Y2_Tnp Location: 1 922471 -1 922573 bp Feature: gene Location: 1922924-1923259 bp Ori: ANU69093.1 Feature: domain Description: KOG3882 Location: 1922966-1923128 bp Feature: domain Description: KOG3882 Location: 1 922966-1 9231 28 bp Feature: gene Location: 2191630-2192025 bp Ori: ANU69339.1 Feature: domain Description: Polyketide_cyc2 Location: 2191660-2192023 bp Feature: domain Description: Polyketide_cyc2 Location: 21 91 660-21 92023 bp Feature: gene Location: 2192268-2192684 bp Ori: ANU69340.1 Feature: domain Description: DUF2992 Location: 2192292-2192682 bp Feature: domain Description: DUF2992 Location: 21 92292-21 92682 bp Feature: gene Location: 2193222-2195132 bp Ori: ANU69341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193555-2194293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 93555-21 94293 bp Feature: domain Description: HNHc Note: nucleases Location: 2194851-2195013 bp Feature: domain Description: HNHc Note: nucleases Location: 21 94851 -21 9501 3 bp Feature: gene Location: 2195874-2196008 bp Ori: ANU69342.1 Feature: domain Description: DUF3789 Location: 2195886-2195979 bp Feature: domain Description: DUF3789 Location: 21 95886-21 95979 bp Feature: gene Location: 2196021-2197217 bp Ori: ANU69343.1 Feature: domain Description: HTH_XRE Location: 2196045-2196198 bp Feature: domain Description: HTH_XRE Location: 21 96045-21 961 98 bp Feature: domain Description: Rol_Rep_N Location: 2196231-2196495 bp Feature: domain Description: Rol_Rep_N Location: 21 96231 -21 96495 bp Feature: domain Description: Rep_trans Location: 2196519-2197134 bp Feature: domain Description: Rep_trans Location: 21 9651 9-21 971 34 bp Feature: gene Location: 3415694-3415945 bp Feature: gene Location: 3416034-3417248 bp Ori: ANU70480.1 Feature: domain Description: IS285 Location: 3416091-3417231 bp Feature: domain Description: IS285 Location: 341 6091 -341 7231 bp Feature: gene Location: 3417405-3418970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3417450-3418149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 7450-341 81 49 bp Feature: gene Location: 3419086-3419202 bp Feature: gene Location: 3419195-3419389 bp Feature: gene Location: 3430394-3430798 bp Ori: ANU70496.1 Feature: domain Description: PrgI Location: 3430409-3430682 bp Feature: domain Description: PrgI Location: 3430409-3430682 bp Feature: gene Location: 3430746-3432254 bp Feature: domain Description: VirB4_CagE Location: 3430878-3431316 bp Feature: domain Description: VirB4_CagE Location: 3430878-3431 31 6 bp Feature: domain Description: VirB4_CagE Location: 3431565-3432048 bp Feature: domain Description: VirB4_CagE Location: 3431 565-3432048 bp Feature: domain Description: AAA_10 Location: 3432117-3432255 bp Feature: domain Description: AAA_1 0 Location: 34321 1 7-3432255 bp Feature: gene Location: 3432810-3434483 bp Feature: domain Description: RVT_N Location: 3432882-3433125 bp Feature: domain Description: RVT_N Location: 3432882-34331 25 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433170-3433830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34331 70-3433830 bp Feature: domain Description: GIIM Note: maturase Location: 3433881-3434118 bp Feature: domain Description: GIIM Note: maturase Location: 3433881 -34341 1 8 bp Feature: gene Location: 3434410-3435468 bp Ori: ARE64729.1 Feature: domain Description: VirB4_CagE Location: 3434578-3435343 bp Feature: domain Description: VirB4_CagE Location: 3434578-3435343 bp Feature: gene Location: 3435483-3436262 bp Feature: gene Location: 4375305-4376513 bp Ori: ANU71304.2 Feature: domain Description: HTH_3 Location: 4375368-4375491 bp Feature: domain Description: HTH_3 Location: 4375368-4375491 bp Feature: domain Description: Rol_Rep_N Location: 4375527-4375788 bp Feature: domain Description: Rol_Rep_N Location: 4375527-4375788 bp Feature: domain Description: Rep_trans Location: 4375812-4376427 bp Feature: domain Description: Rep_trans Location: 437581 2-4376427 bp Feature: gene Location: 4376520-4376657 bp Ori: ANU71305.1 Feature: domain Description: DUF3789 Location: 4376532-4376625 bp Feature: domain Description: DUF3789 Location: 4376532-4376625 bp Feature: gene Location: 4377398-4379308 bp Ori: ANU71306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4377731-4378469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4377731 -4378469 bp Feature: domain Description: HNHc Note: nucleases Location: 4379027-4379189 bp Feature: domain Description: HNHc Note: nucleases Location: 4379027-43791 89 bp Feature: gene Location: 4379725-4380210 bp Feature: gene Location: 4380330-4380587 bp Ori: ANU71308.1 Feature: domain Description: PRK10095 Location: 4380444-4380561 bp Feature: domain Description: PRK1 0095 Location: 4380444-4380561 bp Feature: gene Location: 4386642-4387574 bp Ori: ARE64738.1 Feature: domain Description: Lysozyme_like Location: 4386789-4387251 bp Feature: domain Description: Lysozyme_like Location: 4386789-4387251 bp Feature: domain Description: Spr Location: 4387281-4387563 bp Feature: domain Description: Spr Location: 4387281 -4387563 bp Feature: gene Location: 4387734-4387959 bp Feature: gene Location: 4388194-4389990 bp Ori: ANU71313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4388461-4389271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4388461 -4389271 bp Feature: domain Description: Intron_maturas2 Location: 4389337-4389649 bp Feature: domain Description: Intron_maturas2 Location: 4389337-4389649 bp Feature: domain Description: HNHc Note: nucleases Location: 4389808-4389964 bp Feature: domain Description: HNHc Note: nucleases Location: 4389808-4389964 bp Feature: gene Location: 4389997-4390218 bp Feature: gene Location: 4390236-4391099 bp Ori: ANU71315.1 Feature: domain Description: TpcC Location: 4390452-4391091 bp Feature: domain Description: TpcC Location: 4390452-4391 091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RPOL9 (smart00661), Y2_Tnp (pfam04986), RVT-GII, GIIM (pfam08388), Zn_Tnp_IS91 (pfam14319), KOG3882 (KOG3882, Tetraspanin family integral membrane protein ), Polyketide_cyc2 (pfam10604), DUF2992 (pfam11208), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), IS285 (COG3328), PrgI (pfam12666), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), RVT_N (pfam13655), HTH_3 (pfam01381), PRK10095 (ribonuclease I; Provisional)
Lysozyme_like (pfam13702), Spr (COG0791), Intron_maturas2 (pfam01348), TpcC (pfam12642)