myRT

myRT report for GCA_001689125.2_ASM168912v2

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Seq: CP015405.2 Blautia sp. YL58 chromosome, complete genome (5128746 bp)
Overview 1 RT 1: 33410-36821 bp 2 RT 2: 996061-999502 bp 3 RT 3: 1547372-1552478 bp 4 RT 4: 1557441-1567484 bp 5 RT 5: 1661930-1666668 bp 6 RT 6: 2815135-2819640 bp 7 RT 7: 3011807-3016266 bp 8 RT 8: 3464958-3471709 bp 9 RT 9: 3934388-3942099 bp 10 RT 10: 4015832-4023454 bp 11 RT 11: 4965363-4971631 bp Neighborhood of RT #1 [33410, 36859] RVT-GII GIIM PRK00702 Rib_5-P_isom_A Neighborhood of RT #2 [996061, 999660] RVT-GII GIIM YhcF CcmA Neighborhood of RT #3 [1547372, 1552495] CHAP CwlT_like CHAP RVT-GII KOG4768 HNHc Lysozyme_like Neighborhood of RT #4 [1557441, 1567484] VirD4 RVT-GII VirD4 DUF4314 RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #5 [1661930, 1666668] PRK00110 TlyC RVT-GII GIIM Neighborhood of RT #6 [2815135, 2819651] CcmA ABC2_membrane RVT-GII GIIM MarR Neighborhood of RT #7 [3011807, 3016283] maj_tail_phi13 RVT-GII HK97-gp10_like Phage_H_T_join Neighborhood of RT #8 [3464958, 3471711] MelB Aes RVT-GII Cupin_2 AraC Glyco_hydro_39 PRK02813 Neighborhood of RT #9 [3934388, 3942099] vWA_norD_type MDN1 RVT-GII HNHc AAA Neighborhood of RT #10 [4015832, 4023492] LolD SalY SalY RVT-GII GIIM RVT-GII GIIM Sigma70_r4 Neighborhood of RT #11 [4965363, 4971699] PRK09273 RVT-Retrons YesN YesN YesM Feature: gene Location: 33410-33766 bp Feature: gene Location: 33923-34156 bp Feature: gene Location: 34716-35957 bp Ori: ANU74319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34920-35577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34920-35577 bp Feature: domain Description: GIIM Note: maturase Location: 35658-35877 bp Feature: domain Description: GIIM Note: maturase Location: 35658-35877 bp Feature: gene Location: 36183-36650 bp Ori: ANU74320.2 Feature: domain Description: PRK00702 Location: 36225-36645 bp Feature: domain Description: PRK00702 Location: 36225-36645 bp Feature: gene Location: 36665-36859 bp Ori: ARE64853.1 Feature: domain Description: Rib_5-P_isom_A Location: 36668-36821 bp Feature: domain Description: Rib_5-P_isom_A Location: 36668-36821 bp Feature: gene Location: 996061-996147 bp Feature: gene Location: 996171-996377 bp Feature: gene Location: 996921-998162 bp Ori: ANU75089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997125-997782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9971 25-997782 bp Feature: domain Description: GIIM Note: maturase Location: 997863-998082 bp Feature: domain Description: GIIM Note: maturase Location: 997863-998082 bp Feature: gene Location: 998420-998794 bp Ori: ANU75090.1 Feature: domain Description: YhcF Location: 998435-998789 bp Feature: domain Description: YhcF Location: 998435-998789 bp Feature: gene Location: 998797-999660 bp Ori: ANU75091.1 Feature: domain Description: CcmA Location: 998800-999502 bp Feature: domain Description: CcmA Location: 998800-999502 bp Feature: gene Location: 1547372-1547968 bp Feature: domain Description: CHAP Location: 1547717-1547894 bp Feature: domain Description: CHAP Location: 1 54771 7-1 547894 bp Feature: gene Location: 1548055-1548693 bp Ori: ANU75575.2 Feature: domain Description: CwlT_like Location: 1548082-1548232 bp Feature: domain Description: CwlT_like Location: 1 548082-1 548232 bp Feature: domain Description: CHAP Location: 1548349-1548616 bp Feature: domain Description: CHAP Location: 1 548349-1 54861 6 bp Feature: gene Location: 1548771-1550546 bp Ori: ANU75576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1549029-1549740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 549029-1 549740 bp Feature: domain Description: KOG4768 Location: 1549824-1549938 bp Feature: domain Description: KOG4768 Location: 1 549824-1 549938 bp Feature: domain Description: HNHc Note: nucleases Location: 1550289-1550406 bp Feature: domain Description: HNHc Note: nucleases Location: 1 550289-1 550406 bp Feature: gene Location: 1550779-1551171 bp Feature: gene Location: 1551314-1552495 bp Ori: ANU75578.1 Feature: domain Description: Lysozyme_like Location: 1552181-1552478 bp Feature: domain Description: Lysozyme_like Location: 1 5521 81 -1 552478 bp Feature: gene Location: 1557441-1558478 bp Ori: ARE64871.1 Feature: domain Description: VirD4 Location: 1557564-1558335 bp Feature: domain Description: VirD4 Location: 1 557564-1 558335 bp Feature: gene Location: 1558459-1558638 bp Feature: gene Location: 1558673-1560558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1558991-1559366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 558991 -1 559366 bp Feature: gene Location: 1560692-1560949 bp Feature: gene Location: 1561338-1562012 bp Feature: domain Description: VirD4 Location: 1561371-1562013 bp Feature: domain Description: VirD4 Location: 1 561 371 -1 56201 3 bp Feature: gene Location: 1562036-1562293 bp Ori: ANU75587.1 Feature: domain Description: DUF4314 Location: 1562057-1562252 bp Feature: domain Description: DUF431 4 Location: 1 562057-1 562252 bp Feature: gene Location: 1562471-1563712 bp Ori: ANU75588.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1562675-1563332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 562675-1 563332 bp Feature: domain Description: GIIM Note: maturase Location: 1563413-1563632 bp Feature: domain Description: GIIM Note: maturase Location: 1 56341 3-1 563632 bp Feature: gene Location: 1564257-1565672 bp Ori: ANU75589.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1564605-1565223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 564605-1 565223 bp Feature: domain Description: GIIM Note: maturase Location: 1565277-1565496 bp Feature: domain Description: GIIM Note: maturase Location: 1 565277-1 565496 bp Feature: gene Location: 1566145-1566453 bp Feature: gene Location: 1566534-1567484 bp Feature: gene Location: 1661930-1662658 bp Ori: ANU75667.1 Feature: domain Description: PRK00110 Location: 1661933-1662653 bp Feature: domain Description: PRK001 1 0 Location: 1 661 933-1 662653 bp Feature: gene Location: 1662628-1664007 bp Ori: ANU75668.1 Feature: domain Description: TlyC Location: 1662652-1663969 bp Feature: domain Description: TlyC Location: 1 662652-1 663969 bp Feature: gene Location: 1664616-1665905 bp Ori: ANU75669.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664907-1665540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 664907-1 665540 bp Feature: domain Description: GIIM Note: maturase Location: 1665621-1665837 bp Feature: domain Description: GIIM Note: maturase Location: 1 665621 -1 665837 bp Feature: gene Location: 1665997-1666191 bp Feature: gene Location: 1666429-1666668 bp Feature: gene Location: 2815135-2816110 bp Feature: domain Description: CcmA Location: 2815144-2816059 bp Feature: domain Description: CcmA Location: 281 51 44-281 6059 bp Feature: gene Location: 2816085-2816840 bp Ori: ANU76650.1 Feature: domain Description: ABC2_membrane Location: 2816094-2816724 bp Feature: domain Description: ABC2_membrane Location: 281 6094-281 6724 bp Feature: gene Location: 2817234-2818523 bp Ori: ANU76651.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2817525-2818158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 7525-281 81 58 bp Feature: domain Description: GIIM Note: maturase Location: 2818239-2818458 bp Feature: domain Description: GIIM Note: maturase Location: 281 8239-281 8458 bp Feature: gene Location: 2818615-2818809 bp Feature: gene Location: 2819205-2819651 bp Ori: ANU76652.1 Feature: domain Description: MarR Location: 2819289-2819640 bp Feature: domain Description: MarR Location: 281 9289-281 9640 bp Feature: gene Location: 3011807-3012439 bp Ori: ANU76809.1 Feature: domain Description: maj_tail_phi13 Location: 3011825-3012365 bp Feature: domain Description: maj_tail_phi1 3 Location: 301 1 825-301 2365 bp Feature: gene Location: 3012423-3012671 bp Feature: gene Location: 3012852-3014775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013197-3013350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 31 97-301 3350 bp Feature: gene Location: 3015559-3015939 bp Ori: ANU76810.1 Feature: domain Description: HK97-gp10_like Location: 3015598-3015829 bp Feature: domain Description: HK97-gp1 0_like Location: 301 5598-301 5829 bp Feature: gene Location: 3015942-3016283 bp Ori: ANU76811.1 Feature: domain Description: Phage_H_T_join Location: 3015963-3016266 bp Feature: domain Description: Phage_H_T_join Location: 301 5963-301 6266 bp Feature: gene Location: 3464958-3466307 bp Ori: ANU77166.1 Feature: domain Description: MelB Location: 3464964-3466296 bp Feature: domain Description: MelB Location: 3464964-3466296 bp Feature: gene Location: 3466337-3467254 bp Ori: ANU78716.1 Feature: domain Description: Aes Location: 3466481-3467183 bp Feature: domain Description: Aes Location: 3466481 -34671 83 bp Feature: gene Location: 3467441-3467848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3467444-3467849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3467444-3467849 bp Feature: gene Location: 3467919-3470375 bp Ori: ANU77168.1 Feature: domain Description: Cupin_2 Location: 3467961-3468096 bp Feature: domain Description: Cupin_2 Location: 3467961 -3468096 bp Feature: domain Description: AraC Location: 3468357-3468687 bp Feature: domain Description: AraC Location: 3468357-3468687 bp Feature: domain Description: Glyco_hydro_39 Location: 3468912-3470028 bp Feature: domain Description: Glyco_hydro_39 Location: 346891 2-3470028 bp Feature: gene Location: 3470443-3471711 bp Ori: ANU77169.1 Feature: domain Description: PRK02813 Location: 3470452-3471709 bp Feature: domain Description: PRK0281 3 Location: 3470452-3471 709 bp Feature: gene Location: 3934388-3936640 bp Ori: ANU77523.1 Feature: domain Description: vWA_norD_type Location: 3936083-3936569 bp Feature: domain Description: vWA_norD_type Location: 3936083-3936569 bp Feature: gene Location: 3936669-3937574 bp Feature: domain Description: MDN1 Location: 3936885-3937401 bp Feature: domain Description: MDN1 Location: 3936885-3937401 bp Feature: gene Location: 3937684-3939576 bp Ori: ANU77524.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937996-3938725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937996-3938725 bp Feature: domain Description: HNHc Note: nucleases Location: 3939292-3939457 bp Feature: domain Description: HNHc Note: nucleases Location: 3939292-3939457 bp Feature: gene Location: 3940354-3941337 bp Feature: domain Description: AAA Location: 3941212-3941329 bp Feature: domain Description: AAA Location: 3941 21 2-3941 329 bp Feature: gene Location: 3941341-3942099 bp Feature: gene Location: 4015832-4016515 bp Ori: ANU77602.1 Feature: domain Description: LolD Location: 4015844-4016486 bp Feature: domain Description: LolD Location: 401 5844-401 6486 bp Feature: gene Location: 4016512-4018845 bp Ori: ANU77603.1 Feature: domain Description: SalY Location: 4016590-4017658 bp Feature: domain Description: SalY Location: 401 6590-401 7658 bp Feature: domain Description: SalY Location: 4018165-4018822 bp Feature: domain Description: SalY Location: 401 81 65-401 8822 bp Feature: gene Location: 4019389-4020630 bp Ori: ANU77604.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4019593-4020250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 9593-4020250 bp Feature: domain Description: GIIM Note: maturase Location: 4020331-4020550 bp Feature: domain Description: GIIM Note: maturase Location: 4020331 -4020550 bp Feature: gene Location: 4021176-4022573 bp Ori: ANU77605.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021497-4022124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021 497-40221 24 bp Feature: domain Description: GIIM Note: maturase Location: 4022178-4022397 bp Feature: domain Description: GIIM Note: maturase Location: 40221 78-4022397 bp Feature: gene Location: 4022673-4022825 bp Feature: gene Location: 4023124-4023492 bp Ori: ANU77606.1 Feature: domain Description: Sigma70_r4 Location: 4023325-4023454 bp Feature: domain Description: Sigma70_r4 Location: 4023325-4023454 bp Feature: gene Location: 4965363-4966001 bp Ori: ANU78352.1 Feature: domain Description: PRK09273 Location: 4965366-4965996 bp Feature: domain Description: PRK09273 Location: 4965366-4965996 bp Feature: gene Location: 4966072-4966857 bp Feature: gene Location: 4966891-4967913 bp Ori: ANU78354.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4967056-4967611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4967056-496761 1 bp Feature: gene Location: 4968404-4969981 bp Ori: ANU78355.2 Feature: domain Description: YesN Location: 4968461-4968824 bp Feature: domain Description: YesN Location: 4968461 -4968824 bp Feature: domain Description: YesN Location: 4969391-4969973 bp Feature: domain Description: YesN Location: 4969391 -4969973 bp Feature: gene Location: 4969921-4971699 bp Ori: ANU78356.1 Feature: domain Description: YesM Location: 4970443-4971631 bp Feature: domain Description: YesM Location: 4970443-4971 631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK00702 (ribose-5-phosphate isomerase RpiA), Rib_5-P_isom_A (pfam06026), YhcF (COG1725), CcmA (COG4133), CHAP (pfam05257), CwlT_like, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HNHc (smart00507)
Lysozyme_like (pfam13702), VirD4 (COG3505), DUF4314 (pfam14192), PRK00110 (YebC/PmpR family DNA-binding transcriptional regulator), TlyC (COG1253), ABC2_membrane (pfam01061), MarR (pfam01047), maj_tail_phi13 (TIGR01603), HK97-gp10_like (pfam04883), Phage_H_T_join (pfam05521)
MelB (COG2211), Aes (COG0657), Cupin_2 (pfam07883), AraC (COG2207), Glyco_hydro_39 (pfam01229), PRK02813 (putative aminopeptidase 2; Provisional), vWA_norD_type (cd01454), MDN1 (COG5271), AAA (TIGR00769), LolD (COG1136)
SalY (COG0577), Sigma70_r4 (pfam04545), PRK09273 (hypothetical protein; Provisional), RVT-Retrons, YesN (COG4753), YesM (COG2972)