myRT

myRT report for GCA_001693515.2_ASM169351v2

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Seq: CP042968.1 Bradyrhizobium paxllaeri strain LMTR 21 chromosome, complete genome (8377719 bp)
Overview 1 RT 1: 1377835-1382724 bp 2 RT 2: 4947685-4955670 bp 3 RT 3: 5094077-5097816 bp 4 RT 4: 5309819-5316149 bp 5 RT 5: 5942591-5949075 bp Neighborhood of RT #1 [1377835, 1384373] REC RVT-GII Intron_maturas2 ParB_N_like Neighborhood of RT #2 [4947685, 4955670] WGR_DNA_ligase SWIM RVT-Retrons Neighborhood of RT #3 [5094077, 5097824] RVT-GII GIIM beta_CA_cladeC Neighborhood of RT #4 [5309819, 5316196] SRAP RVT-GII GIIM RVT-GII DDE_Tnp_1_6 Neighborhood of RT #5 [5942591, 5949080] HTH_31 RVT-GII Intron_maturas2 INT_Cre_C PRK05995 Feature: gene Location: 1377835-1378179 bp Feature: domain Description: REC Location: 1377856-1378174 bp Feature: domain Description: REC Location: 1 377856-1 3781 74 bp Feature: gene Location: 1378757-1379113 bp Feature: gene Location: 1379301-1381196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379568-1380399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 379568-1 380399 bp Feature: domain Description: Intron_maturas2 Location: 1380510-1380792 bp Feature: domain Description: Intron_maturas2 Location: 1 38051 0-1 380792 bp Feature: gene Location: 1381196-1381852 bp Feature: gene Location: 1382361-1384373 bp Feature: domain Description: ParB_N_like Location: 1382472-1382724 bp Feature: domain Description: ParB_N_like Location: 1 382472-1 382724 bp Feature: gene Location: 4947685-4950843 bp Feature: domain Description: WGR_DNA_ligase Location: 4947703-4947937 bp Feature: domain Description: WGR_DNA_ligase Location: 4947703-4947937 bp Feature: gene Location: 4950840-4952510 bp Feature: domain Description: SWIM Location: 4952340-4952451 bp Feature: domain Description: SWIM Location: 4952340-4952451 bp Feature: gene Location: 4952863-4954731 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4953415-4954078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 495341 5-4954078 bp Feature: gene Location: 4954817-4955296 bp Feature: gene Location: 4955317-4955670 bp Feature: gene Location: 5094077-5094265 bp Feature: gene Location: 5094467-5094670 bp Feature: gene Location: 5094872-5096260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5095076-5095733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5095076-5095733 bp Feature: domain Description: GIIM Note: maturase Location: 5095859-5096024 bp Feature: domain Description: GIIM Note: maturase Location: 5095859-5096024 bp Feature: gene Location: 5096615-5096743 bp Feature: gene Location: 5097147-5097824 bp Feature: domain Description: beta_CA_cladeC Location: 5097249-5097816 bp Feature: domain Description: beta_CA_cladeC Location: 5097249-509781 6 bp Feature: gene Location: 5309819-5310169 bp Feature: domain Description: SRAP Location: 5309834-5310137 bp Feature: domain Description: SRAP Location: 5309834-531 01 37 bp Feature: gene Location: 5310210-5310416 bp Feature: gene Location: 5310527-5311915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5310872-5311493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 0872-531 1 493 bp Feature: domain Description: GIIM Note: maturase Location: 5311544-5311760 bp Feature: domain Description: GIIM Note: maturase Location: 531 1 544-531 1 760 bp Feature: gene Location: 5312328-5312537 bp Feature: gene Location: 5313587-5313811 bp Feature: gene Location: 5314110-5315585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5314518-5315208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 451 8-531 5208 bp Feature: gene Location: 5315592-5315918 bp Feature: gene Location: 5316005-5316196 bp Feature: domain Description: DDE_Tnp_1_6 Location: 5316011-5316149 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 531 601 1 -531 61 49 bp Feature: gene Location: 5942591-5942926 bp Feature: domain Description: HTH_31 Location: 5942648-5942810 bp Feature: domain Description: HTH_31 Location: 5942648-594281 0 bp Feature: gene Location: 5943124-5943258 bp Feature: gene Location: 5944002-5945864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5944269-5945100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5944269-59451 00 bp Feature: domain Description: Intron_maturas2 Location: 5945229-5945493 bp Feature: domain Description: Intron_maturas2 Location: 5945229-5945493 bp Feature: gene Location: 5946946-5948241 bp Feature: domain Description: INT_Cre_C Location: 5947960-5948152 bp Feature: domain Description: INT_Cre_C Location: 5947960-59481 52 bp Feature: gene Location: 5948298-5949080 bp Feature: domain Description: PRK05995 Location: 5948313-5949075 bp Feature: domain Description: PRK05995 Location: 594831 3-5949075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-GII, Intron_maturas2 (pfam01348), ParB_N_like (cd16411), WGR_DNA_ligase (cd07998), SWIM (pfam04434), RVT-Retrons, GIIM (pfam08388), beta_CA_cladeC (cd03378), SRAP (pfam02586)
DDE_Tnp_1_6 (pfam13751), HTH_31 (pfam13560), INT_Cre_C (cd00799), PRK05995 (enoyl-CoA hydratase; Provisional)