myRT

myRT report for GCA_001693635.1_ASM169363v1

Download annotations/find similar RTs

Seq: CP016546.1 Escherichia coli strain O177:H21 chromosome, complete genome (5134536 bp)
Overview 1 RT 1: 1181984-1187972 bp 2 RT 2: 1963375-1968356 bp 3 RT 3: 4415434-4420221 bp Neighborhood of RT #1 [1181984, 1188007] Psu RVT-UG7 PRK09692 proA Neighborhood of RT #2 [1963375, 1968475] PRK10597 SLATT_5 RVT-UG17 Caudo_TAP Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Neighborhood of RT #3 [4415434, 4420256] InsA DDE_Tnp_IS1 RVT-GII DcuC PRK13381 Feature: gene Location: 1181984-1182556 bp Ori: ANW28487.1 Feature: domain Description: Psu Location: 1182002-1182539 bp Feature: domain Description: Psu Location: 1 1 82002-1 1 82539 bp Feature: gene Location: 1182858-1183598 bp Feature: gene Location: 1183595-1185222 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1184003-1184432 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 1 84003-1 1 84432 bp Feature: gene Location: 1185215-1186399 bp Ori: ANW28489.1 Feature: domain Description: PRK09692 Location: 1185221-1186376 bp Feature: domain Description: PRK09692 Location: 1 1 85221 -1 1 86376 bp Feature: gene Location: 1186754-1188007 bp Ori: ANW28490.1 Feature: domain Description: proA Location: 1186781-1187972 bp Feature: domain Description: proA Location: 1 1 86781 -1 1 87972 bp Feature: gene Location: 1963375-1963623 bp Ori: ANW29203.1 Feature: domain Description: PRK10597 Location: 1963378-1963618 bp Feature: domain Description: PRK1 0597 Location: 1 963378-1 96361 8 bp Feature: gene Location: 1963846-1964397 bp Ori: ANW29204.1 Feature: domain Description: SLATT_5 Location: 1963852-1964368 bp Feature: domain Description: SLATT_5 Location: 1 963852-1 964368 bp Feature: gene Location: 1964375-1965745 bp Ori: ANW29205.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1964603-1965209 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 964603-1 965209 bp Feature: gene Location: 1965858-1966442 bp Ori: ANW29206.1 Feature: domain Description: Caudo_TAP Location: 1966074-1966431 bp Feature: domain Description: Caudo_TAP Location: 1 966074-1 966431 bp Feature: gene Location: 1966442-1968475 bp Ori: ANW29207.1 Feature: domain Description: Phage_fiber_2 Location: 1966463-1966583 bp Feature: domain Description: Phage_fiber_2 Location: 1 966463-1 966583 bp Feature: domain Description: Collar Location: 1967798-1967936 bp Feature: domain Description: Collar Location: 1 967798-1 967936 bp Feature: domain Description: Phage_fiber Location: 1967987-1968026 bp Feature: domain Description: Phage_fiber Location: 1 967987-1 968026 bp Feature: domain Description: Phage_fiber Location: 1968083-1968122 bp Feature: domain Description: Phage_fiber Location: 1 968083-1 9681 22 bp Feature: domain Description: Phage_fiber Location: 1968278-1968317 bp Feature: domain Description: Phage_fiber Location: 1 968278-1 96831 7 bp Feature: domain Description: Phage_fiber Location: 1968323-1968356 bp Feature: domain Description: Phage_fiber Location: 1 968323-1 968356 bp Feature: gene Location: 4415434-4415709 bp Ori: ANW31400.1 Feature: domain Description: InsA Location: 4415440-4415704 bp Feature: domain Description: InsA Location: 441 5440-441 5704 bp Feature: gene Location: 4415628-4416131 bp Ori: ANW31401.1 Feature: domain Description: DDE_Tnp_IS1 Location: 4415739-4416129 bp Feature: domain Description: DDE_Tnp_IS1 Location: 441 5739-441 61 29 bp Feature: gene Location: 4416550-4416996 bp Ori: ANW31402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4416856-4416958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 6856-441 6958 bp Feature: gene Location: 4417642-4419003 bp Ori: ANW31403.1 Feature: domain Description: DcuC Location: 4417645-4418977 bp Feature: domain Description: DcuC Location: 441 7645-441 8977 bp Feature: gene Location: 4419000-4420256 bp Ori: ANW31404.1 Feature: domain Description: PRK13381 Location: 4419006-4420221 bp Feature: domain Description: PRK1 3381 Location: 441 9006-4420221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407), PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Phage_fiber_2 (pfam03406), Collar (pfam07484)
Phage_fiber (pfam03335), InsA (COG3677), DDE_Tnp_IS1 (pfam03400), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)