myRT

myRT report for GCA_001704955.2_ASM170495v2

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Seq: CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence (147539 bp)
Overview 1 RT 1: 27137-31630 bp 2 RT 2: 35122-37867 bp Neighborhood of RT #1 [27137, 31630] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Neighborhood of RT #2 [35122, 37867] BcsQ RVT-DGRs YfmG Feature: gene Location: 27137-27412 bp Ori: AUS35831.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 27146-27377 bp Feature: domain Description: Cas2_I_II_III Location: 271 46-27377 bp Feature: gene Location: 27412-28416 bp Ori: AUS35832.1 Gene: cas1 Feature: domain Description: Cas1_I-II-III Location: 27421-28378 bp Feature: domain Description: Cas1 _I-II-III Location: 27421 -28378 bp Feature: gene Location: 28521-29498 bp Ori: AUS35833.1 Gene: ltrA Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 28728-29334 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 28728-29334 bp Feature: gene Location: 29980-30606 bp Feature: gene Location: 31415-31630 bp Feature: gene Location: 35122-35895 bp Ori: AUS35840.1 Feature: domain Description: BcsQ Location: 35125-35818 bp Feature: domain Description: BcsQ Location: 351 25-3581 8 bp Feature: gene Location: 35892-36362 bp Feature: gene Location: 36503-37210 bp Ori: AUS35842.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36539-37001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36539-37001 bp Feature: gene Location: 37235-37363 bp Feature: domain Description: YfmG Location: 37238-37343 bp Feature: domain Description: YfmG Location: 37238-37343 bp Feature: gene Location: 37601-37867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, BcsQ (COG1192), RVT-DGRs, YfmG (COG1262)

Seq: CP012375.1 Microcystis aeruginosa NIES-2481, complete genome (4293006 bp)
Overview 1 RT 1: 2042657-2047403 bp 2 RT 2: 2111112-2117434 bp 3 RT 3: 2909643-2915576 bp 4 RT 4: 3010196-3016419 bp 5 RT 5: 3646247-3659413 bp 6 RT 6: 4285149-4291095 bp Neighborhood of RT #1 [2042657, 2047403] DUF3177 CP12 RVT_N RVT-GII GIIM McrA NPV_P10 Neighborhood of RT #2 [2111112, 2117434] GT_2_WfgS_like glyco_rpt_poly RVT_N RVT-GII GIIM McrA DUF433 Neighborhood of RT #3 [2909643, 2915635] UGD_SDR_e Methyltransf_23 RVT_N RVT-GII GIIM McrA SpsE Neighborhood of RT #4 [3010196, 3016544] TlyC RVT_N RVT-GII GIIM HNHc HTH_Tnp_4 DDE_Tnp_4 Neighborhood of RT #5 [3646247, 3659413] syh P-type_ATPase_HM_ZosA_PfeT-like RVT_N RVT-GII GIIM McrA HicB RVT_N RVT-GII GIIM McrA TPR TPR_1 TPR_1 TPR_1 TPR_1 TPR_1 TPR_1 TPR_1 TPR_1 TPR COG4995 Neighborhood of RT #6 [4285149, 4291103] HTH_Tnp_4 DDE_Tnp_4 RVT_N RVT-GII GIIM McrA InsQ PRK00180 Feature: gene Location: 2042657-2043250 bp Ori: AOC52796.1 Feature: domain Description: DUF3177 Location: 2042678-2043239 bp Feature: domain Description: DUF3177 Location: 2 042 678-2 0432 39 bp Feature: gene Location: 2043426-2043650 bp Ori: AOC52797.1 Feature: domain Description: CP12 Location: 2043438-2043645 bp Feature: domain Description: CP12 Location: 2 043438-2 043645 bp Feature: gene Location: 2043753-2045597 bp Ori: AOC52798.1 Feature: domain Description: RVT_N Location: 2043819-2044062 bp Feature: domain Description: RVT_N Location: 2 043819-2 044062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2044107-2044776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 044107-2 044776 bp Feature: domain Description: GIIM Note: maturase Location: 2044878-2045100 bp Feature: domain Description: GIIM Note: maturase Location: 2 044878-2 045100 bp Feature: domain Description: McrA Location: 2045223-2045484 bp Feature: domain Description: McrA Location: 2 0452 2 3-2 045484 bp Feature: gene Location: 2046581-2046877 bp Ori: AOC52799.1 Feature: domain Description: NPV_P10 Location: 2046698-2046791 bp Feature: domain Description: NPV_P10 Location: 2 046698-2 046791 bp Feature: gene Location: 2047068-2047403 bp Feature: gene Location: 2111112-2112110 bp Ori: AOC52877.1 Feature: domain Description: GT_2_WfgS_like Location: 2111139-2111730 bp Feature: domain Description: GT_2 _WfgS_like Location: 2 111139-2 111730 bp Feature: gene Location: 2112219-2113517 bp Ori: AOC52878.1 Feature: domain Description: glyco_rpt_poly Location: 2112411-2113461 bp Feature: domain Description: glyco_rpt_poly Location: 2 112 411-2 113461 bp Feature: gene Location: 2114129-2115964 bp Ori: AOC52879.1 Feature: domain Description: RVT_N Location: 2114195-2114438 bp Feature: domain Description: RVT_N Location: 2 114195-2 114438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2114483-2115155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 114483-2 115155 bp Feature: domain Description: GIIM Note: maturase Location: 2115254-2115476 bp Feature: domain Description: GIIM Note: maturase Location: 2 1152 54-2 115476 bp Feature: domain Description: McrA Location: 2115593-2115860 bp Feature: domain Description: McrA Location: 2 115593-2 115860 bp Feature: gene Location: 2116634-2117029 bp Ori: AOC52880.1 Feature: domain Description: DUF433 Location: 2116694-2116823 bp Feature: domain Description: DUF433 Location: 2 116694-2 11682 3 bp Feature: gene Location: 2117171-2117434 bp Feature: gene Location: 2909643-2910683 bp Ori: AOC53685.1 Feature: domain Description: UGD_SDR_e Location: 2909721-2910666 bp Feature: domain Description: UGD_SDR_e Location: 2 90972 1-2 910666 bp Feature: gene Location: 2910694-2911254 bp Ori: AOC53686.1 Feature: domain Description: Methyltransf_23 Location: 2910955-2911234 bp Feature: domain Description: Methyltransf_2 3 Location: 2 910955-2 9112 34 bp Feature: gene Location: 2911316-2913151 bp Ori: AOC53687.1 Feature: domain Description: RVT_N Location: 2911382-2911625 bp Feature: domain Description: RVT_N Location: 2 911382 -2 91162 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2911670-2912342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 911670-2 912 342 bp Feature: domain Description: GIIM Note: maturase Location: 2912441-2912663 bp Feature: domain Description: GIIM Note: maturase Location: 2 912 441-2 912 663 bp Feature: domain Description: McrA Location: 2912780-2913047 bp Feature: domain Description: McrA Location: 2 912 780-2 913047 bp Feature: gene Location: 2913828-2914496 bp Feature: gene Location: 2914538-2915635 bp Ori: AOC53689.1 Feature: domain Description: SpsE Location: 2914571-2915576 bp Feature: domain Description: SpsE Location: 2 914571-2 915576 bp Feature: gene Location: 3010196-3011527 bp Ori: AOC53765.1 Feature: domain Description: TlyC Location: 3010214-3011516 bp Feature: domain Description: TlyC Location: 30102 14-3011516 bp Feature: gene Location: 3011560-3011805 bp Feature: gene Location: 3012464-3014194 bp Ori: AOC53767.1 Feature: domain Description: RVT_N Location: 3012491-3012737 bp Feature: domain Description: RVT_N Location: 3012 491-3012 737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3012779-3013466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3012 779-3013466 bp Feature: domain Description: GIIM Note: maturase Location: 3013568-3013778 bp Feature: domain Description: GIIM Note: maturase Location: 3013568-3013778 bp Feature: domain Description: HNHc Note: nucleases Location: 3014018-3014153 bp Feature: domain Description: HNHc Note: nucleases Location: 3014018-3014153 bp Feature: gene Location: 3014692-3014976 bp Feature: gene Location: 3015555-3016544 bp Ori: AOC53769.1 Feature: domain Description: HTH_Tnp_4 Location: 3015741-3015894 bp Feature: domain Description: HTH_Tnp_4 Location: 3015741-3015894 bp Feature: domain Description: DDE_Tnp_4 Location: 3015972-3016419 bp Feature: domain Description: DDE_Tnp_4 Location: 3015972 -3016419 bp Feature: gene Location: 3646247-3647527 bp Ori: AOC54438.1 Feature: domain Description: syh Location: 3646253-3647522 bp Feature: domain Description: syh Location: 36462 53-364752 2 bp Feature: gene Location: 3647548-3649458 bp Ori: AOC54439.1 Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 3647599-3649450 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 3647599-3649450 bp Feature: gene Location: 3650555-3652390 bp Ori: AOC54440.1 Feature: domain Description: RVT_N Location: 3650621-3650864 bp Feature: domain Description: RVT_N Location: 365062 1-3650864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3650909-3651581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3650909-3651581 bp Feature: domain Description: GIIM Note: maturase Location: 3651680-3651902 bp Feature: domain Description: GIIM Note: maturase Location: 3651680-3651902 bp Feature: domain Description: McrA Location: 3652019-3652286 bp Feature: domain Description: McrA Location: 3652 019-3652 2 86 bp Feature: gene Location: 3652586-3652786 bp Ori: AOC54441.1 Feature: domain Description: HicB Location: 3652592-3652751 bp Feature: domain Description: HicB Location: 3652 592 -3652 751 bp Feature: gene Location: 3653809-3655644 bp Ori: AOC54442.1 Feature: domain Description: RVT_N Location: 3653875-3654118 bp Feature: domain Description: RVT_N Location: 3653875-3654118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3654163-3654835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3654163-3654835 bp Feature: domain Description: GIIM Note: maturase Location: 3654934-3655156 bp Feature: domain Description: GIIM Note: maturase Location: 3654934-3655156 bp Feature: domain Description: McrA Location: 3655273-3655540 bp Feature: domain Description: McrA Location: 36552 73-3655540 bp Feature: gene Location: 3655730-3658870 bp Ori: AOC54443.1 Feature: domain Description: TPR Location: 3656180-3656279 bp Feature: domain Description: TPR Location: 3656180-36562 79 bp Feature: domain Description: TPR_1 Location: 3656282-3656381 bp Feature: domain Description: TPR_1 Location: 36562 82 -3656381 bp Feature: domain Description: TPR_1 Location: 3656399-3656483 bp Feature: domain Description: TPR_1 Location: 3656399-3656483 bp Feature: domain Description: TPR_1 Location: 3656489-3656582 bp Feature: domain Description: TPR_1 Location: 3656489-3656582 bp Feature: domain Description: TPR_1 Location: 3656591-3656687 bp Feature: domain Description: TPR_1 Location: 3656591-3656687 bp Feature: domain Description: TPR_1 Location: 3656693-3656789 bp Feature: domain Description: TPR_1 Location: 3656693-3656789 bp Feature: domain Description: TPR_1 Location: 3656795-3656888 bp Feature: domain Description: TPR_1 Location: 3656795-3656888 bp Feature: domain Description: TPR_1 Location: 3656897-3656993 bp Feature: domain Description: TPR_1 Location: 3656897-3656993 bp Feature: domain Description: TPR_1 Location: 3656999-3657095 bp Feature: domain Description: TPR_1 Location: 3656999-3657095 bp Feature: domain Description: TPR Location: 3657224-3657497 bp Feature: domain Description: TPR Location: 36572 2 4-3657497 bp Feature: domain Description: COG4995 Location: 3657638-3658865 bp Feature: domain Description: COG4995 Location: 3657638-3658865 bp Feature: gene Location: 3658874-3659413 bp Feature: gene Location: 4285149-4285268 bp Feature: gene Location: 4285580-4286569 bp Ori: AOC55042.1 Feature: domain Description: HTH_Tnp_4 Location: 4285766-4285919 bp Feature: domain Description: HTH_Tnp_4 Location: 42 85766-42 85919 bp Feature: domain Description: DDE_Tnp_4 Location: 4285997-4286444 bp Feature: domain Description: DDE_Tnp_4 Location: 42 85997-42 86444 bp Feature: gene Location: 4287301-4289061 bp Ori: AOC55043.1 Feature: domain Description: RVT_N Location: 4287361-4287607 bp Feature: domain Description: RVT_N Location: 42 87361-42 87607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4287649-4288318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 87649-42 88318 bp Feature: domain Description: GIIM Note: maturase Location: 4288417-4288651 bp Feature: domain Description: GIIM Note: maturase Location: 42 88417-42 88651 bp Feature: domain Description: McrA Location: 4288729-4289029 bp Feature: domain Description: McrA Location: 42 8872 9-42 8902 9 bp Feature: gene Location: 4289549-4290421 bp Ori: AOC55044.1 Feature: domain Description: InsQ Location: 4289570-4290299 bp Feature: domain Description: InsQ Location: 42 89570-42 902 99 bp Feature: gene Location: 4290489-4291103 bp Ori: AOC55045.1 Feature: domain Description: PRK00180 Location: 4290492-4291095 bp Feature: domain Description: PRK00180 Location: 42 90492 -42 91095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3177 (pfam11375), CP12 (smart01093), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), NPV_P10 (pfam05531), GT_2_WfgS_like (cd06433), glyco_rpt_poly (TIGR04370), DUF433 (pfam04255)
UGD_SDR_e (cd05230), Methyltransf_23 (pfam13489), SpsE (COG2089), TlyC (COG1253), HNHc (smart00507), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), syh (CHL00201), P-type_ATPase_HM_ZosA_PfeT-like (cd07551), HicB (pfam05534)
TPR (smart00028), TPR_1 (pfam00515), COG4995 (Uncharacterized conserved protein, contains CHAT domain ), InsQ (COG0675), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed)