myRT

myRT report for GCA_001705995.2_ASM170599v2

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Seq: CP049045.1 Pseudomonas sp. BIOMIG1BAC chromosome, complete genome (7675262 bp)
Overview 1 RT 1: 5380692-5384523 bp 2 RT 2: 6946515-6952515 bp 3 RT 3: 6955271-6960340 bp 4 RT 4: 7073024-7078515 bp Neighborhood of RT #1 [5380692, 5384570] clpP tig RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [6946515, 6952562] ElsH IS5 RVT-GII GIIM IS5 LysR Neighborhood of RT #3 [6955271, 6960441] ABC_phnC IS5 RVT-GII GIIM IS5 Ftsk_gamma HIRAN Neighborhood of RT #4 [7073024, 7078754] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Nnt1 Feature: gene Location: 5380692-5381333 bp Ori: QIH09711.1 Gene: clpP Feature: domain Description: clpP Location: 5380749-5381316 bp Feature: domain Description: clpP Location: 5380749-5381 31 6 bp Feature: gene Location: 5381425-5382735 bp Ori: QIH09712.1 Gene: tig Feature: domain Description: tig Location: 5381428-5382706 bp Feature: domain Description: tig Location: 5381 428-5382706 bp Feature: gene Location: 5382867-5384570 bp Ori: QIH09713.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5382924-5383167 bp Feature: domain Description: RVT_N Location: 5382924-53831 67 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5383212-5383848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538321 2-5383848 bp Feature: domain Description: GIIM Note: maturase Location: 5383899-5384133 bp Feature: domain Description: GIIM Note: maturase Location: 5383899-53841 33 bp Feature: domain Description: HNH Note: nucleases Location: 5384385-5384523 bp Feature: domain Description: HNH Note: nucleases Location: 5384385-5384523 bp Feature: gene Location: 6946515-6947591 bp Ori: QIH11076.1 Feature: domain Description: ElsH Location: 6946773-6947571 bp Feature: domain Description: ElsH Location: 6946773-6947571 bp Feature: gene Location: 6948755-6949225 bp Feature: domain Description: IS5 Location: 6948761-6949193 bp Feature: domain Description: IS5 Location: 6948761 -69491 93 bp Feature: gene Location: 6949285-6950553 bp Ori: QIH11077.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6949498-6950155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6949498-69501 55 bp Feature: domain Description: GIIM Note: maturase Location: 6950233-6950455 bp Feature: domain Description: GIIM Note: maturase Location: 6950233-6950455 bp Feature: gene Location: 6951073-6951585 bp Feature: domain Description: IS5 Location: 6951262-6951586 bp Feature: domain Description: IS5 Location: 6951 262-6951 586 bp Feature: gene Location: 6951693-6952562 bp Ori: QIH11078.1 Feature: domain Description: LysR Location: 6951711-6952515 bp Feature: domain Description: LysR Location: 6951 71 1 -695251 5 bp Feature: gene Location: 6955271-6956098 bp Ori: QIH11082.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 6955301-6956015 bp Feature: domain Description: ABC_phnC Location: 6955301 -695601 5 bp Feature: gene Location: 6956560-6957072 bp Feature: domain Description: IS5 Location: 6956749-6957073 bp Feature: domain Description: IS5 Location: 6956749-6957073 bp Feature: gene Location: 6957592-6958860 bp Ori: QIH11083.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6957805-6958462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6957805-6958462 bp Feature: domain Description: GIIM Note: maturase Location: 6958540-6958762 bp Feature: domain Description: GIIM Note: maturase Location: 6958540-6958762 bp Feature: gene Location: 6958920-6959390 bp Feature: domain Description: IS5 Location: 6958926-6959364 bp Feature: domain Description: IS5 Location: 6958926-6959364 bp Feature: gene Location: 6959647-6960441 bp Ori: QIH11084.1 Feature: domain Description: Ftsk_gamma Location: 6959776-6959950 bp Feature: domain Description: Ftsk_gamma Location: 6959776-6959950 bp Feature: domain Description: HIRAN Location: 6960205-6960340 bp Feature: domain Description: HIRAN Location: 6960205-6960340 bp Feature: gene Location: 7073024-7074157 bp Ori: QIH11175.1 Gene: ribD Feature: domain Description: ribD Location: 7073057-7074128 bp Feature: domain Description: ribD Location: 7073057-70741 28 bp Feature: gene Location: 7074154-7074618 bp Ori: QIH11176.1 Gene: nrdR Feature: domain Description: TIGR00244 Location: 7074157-7074595 bp Feature: domain Description: TIGR00244 Location: 70741 57-7074595 bp Feature: gene Location: 7074711-7076417 bp Ori: QIH11177.1 Gene: ltrA Feature: domain Description: RVT_N Location: 7074768-7075005 bp Feature: domain Description: RVT_N Location: 7074768-7075005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7075056-7075692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7075056-7075692 bp Feature: domain Description: YkfC Location: 7075824-7075995 bp Feature: domain Description: YkfC Location: 7075824-7075995 bp Feature: domain Description: HNH Note: nucleases Location: 7076229-7076367 bp Feature: domain Description: HNH Note: nucleases Location: 7076229-7076367 bp Feature: gene Location: 7077589-7078047 bp Ori: QIH11178.1 Feature: domain Description: YbaY Location: 7077616-7078042 bp Feature: domain Description: YbaY Location: 707761 6-7078042 bp Feature: gene Location: 7078044-7078754 bp Ori: QIH11179.1 Feature: domain Description: Nnt1 Location: 7078071-7078515 bp Feature: domain Description: Nnt1 Location: 7078071 -707851 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), ElsH (COG3568), IS5 (COG3039), LysR (COG0583), ABC_phnC (TIGR02315)
Ftsk_gamma (smart00843), HIRAN (smart00910), ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), YkfC (COG3344), YbaY (COG3126), Nnt1 (COG3897)