myRT

myRT report for GCA_001708505.1_ASM170850v1

Download annotations/find similar RTs

Seq: CP015992.1 Pseudomonas sp. TCU-HL1 chromosome, complete genome (6244007 bp)
Overview 1 RT 1: 602037-606398 bp 2 RT 2: 609628-613156 bp 3 RT 3: 633652-636669 bp 4 RT 4: 1221714-1225804 bp 5 RT 5: 2095964-2102121 bp 6 RT 6: 2267015-2271892 bp 7 RT 7: 2370908-2377239 bp 8 RT 8: 4369252-4372997 bp Neighborhood of RT #1 [602037, 606398] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 RVT-GII COG1483 Neighborhood of RT #2 [609628, 613156] LGT_LGT_LGT_TIGR03299 RVT-GII MFS_MdfA_MDR_like Neighborhood of RT #3 [633652, 636728] RVT-GII Response_reg Neighborhood of RT #4 [1221714, 1225965] PRK09330 LpxC RVT-GII group_II_RT_mat GIIM DciA Neighborhood of RT #5 [2095964, 2102126] MFS_ExuT_GudP_like MR_like_2 RVT-GII ABALDH Neighborhood of RT #6 [2267015, 2271892] AcrR DUF836 RVT-Retrons Neighborhood of RT #7 [2370908, 2377265] HtpG RVT-GII GIIM YhaK YhfA Neighborhood of RT #8 [4369252, 4373116] HmoA GIIM RVT-GII group_II_RT_mat OprP zf-HC2 Feature: gene Location: 602037-603065 bp Ori: AOE83089.1 Feature: domain Description: LZ_Tnp_IS66 Location: 602163-602382 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6021 63-602382 bp Feature: domain Description: zf-IS66 Location: 602403-602529 bp Feature: domain Description: zf-IS66 Location: 602403-602529 bp Feature: domain Description: DDE_Tnp_IS66 Location: 602571-603030 bp Feature: domain Description: DDE_Tnp_IS66 Location: 602571 -603030 bp Feature: gene Location: 603280-603462 bp Ori: AOE83090.1 Feature: domain Description: TnpB_IS66 Location: 603298-603460 bp Feature: domain Description: TnpB_IS66 Location: 603298-603460 bp Feature: gene Location: 604046-604993 bp Ori: AOE83091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604646-604934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604646-604934 bp Feature: gene Location: 605194-606033 bp Ori: AOE83092.1 Feature: domain Description: COG1483 Location: 605197-605758 bp Feature: domain Description: COG1 483 Location: 6051 97-605758 bp Feature: gene Location: 606123-606398 bp Feature: gene Location: 609628-610596 bp Ori: AOE83098.1 Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 609646-610582 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 609646-61 0582 bp Feature: gene Location: 610690-611019 bp Feature: gene Location: 611365-612180 bp Ori: AOE83100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611626-612166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 626-61 21 66 bp Feature: gene Location: 612663-612911 bp Ori: AOE83101.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 612666-612858 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 61 2666-61 2858 bp Feature: gene Location: 612968-613156 bp Feature: gene Location: 633652-633852 bp Feature: gene Location: 633987-634682 bp Feature: gene Location: 634929-635732 bp Ori: AOE83121.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634935-635361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634935-635361 bp Feature: gene Location: 635834-636127 bp Feature: gene Location: 636327-636728 bp Ori: AOE83123.1 Feature: domain Description: Response_reg Location: 636339-636669 bp Feature: domain Description: Response_reg Location: 636339-636669 bp Feature: gene Location: 1221714-1222901 bp Ori: AOE83680.1 Feature: domain Description: PRK09330 Location: 1221732-1222896 bp Feature: domain Description: PRK09330 Location: 1 221 732-1 222896 bp Feature: gene Location: 1223014-1223925 bp Ori: AOE83681.1 Feature: domain Description: LpxC Location: 1223017-1223908 bp Feature: domain Description: LpxC Location: 1 22301 7-1 223908 bp Feature: gene Location: 1224428-1225030 bp Ori: AOE83682.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224689-1224899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 224689-1 224899 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1224902-1224998 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 224902-1 224998 bp Feature: gene Location: 1225091-1225393 bp Ori: AOE83683.1 Feature: domain Description: GIIM Note: maturase Location: 1225097-1225250 bp Feature: domain Description: GIIM Note: maturase Location: 1 225097-1 225250 bp Feature: gene Location: 1225510-1225965 bp Ori: AOE83684.1 Feature: domain Description: DciA Location: 1225555-1225804 bp Feature: domain Description: DciA Location: 1 225555-1 225804 bp Feature: gene Location: 2095964-2097289 bp Ori: AOE84501.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 2096021-2097233 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 2096021 -2097233 bp Feature: gene Location: 2097313-2098488 bp Ori: AOE84502.1 Feature: domain Description: MR_like_2 Location: 2097319-2098450 bp Feature: domain Description: MR_like_2 Location: 209731 9-2098450 bp Feature: gene Location: 2099029-2099982 bp Ori: AOE84503.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2099290-2099902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2099290-2099902 bp Feature: gene Location: 2100407-2100595 bp Feature: gene Location: 2100702-2102126 bp Ori: AOE84505.1 Feature: domain Description: ABALDH Location: 2100708-2102121 bp Feature: domain Description: ABALDH Location: 21 00708-21 021 21 bp Feature: gene Location: 2267015-2267572 bp Ori: AOE84639.1 Feature: domain Description: AcrR Location: 2267027-2267552 bp Feature: domain Description: AcrR Location: 2267027-2267552 bp Feature: gene Location: 2267686-2267922 bp Ori: AOE84640.1 Feature: domain Description: DUF836 Location: 2267701-2267917 bp Feature: domain Description: DUF836 Location: 2267701 -226791 7 bp Feature: gene Location: 2268609-2269559 bp Ori: AOE84641.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2268720-2269314 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2268720-226931 4 bp Feature: gene Location: 2269556-2270491 bp Feature: gene Location: 2271110-2271892 bp Feature: gene Location: 2370908-2372155 bp Feature: gene Location: 2372288-2374186 bp Ori: AOE84739.1 Feature: domain Description: HtpG Location: 2372303-2374175 bp Feature: domain Description: HtpG Location: 2372303-23741 75 bp Feature: gene Location: 2374919-2375746 bp Ori: AOE84740.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374922-2375333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374922-2375333 bp Feature: domain Description: GIIM Note: maturase Location: 2375390-2375615 bp Feature: domain Description: GIIM Note: maturase Location: 2375390-237561 5 bp Feature: gene Location: 2375965-2376825 bp Ori: AOE84741.1 Feature: domain Description: YhaK Location: 2376031-2376781 bp Feature: domain Description: YhaK Location: 2376031 -2376781 bp Feature: gene Location: 2376846-2377265 bp Ori: AOE84742.1 Feature: domain Description: YhfA Location: 2376849-2377239 bp Feature: domain Description: YhfA Location: 2376849-2377239 bp Feature: gene Location: 4369252-4369572 bp Ori: AOE86629.1 Feature: domain Description: HmoA Location: 4369294-4369567 bp Feature: domain Description: HmoA Location: 4369294-4369567 bp Feature: gene Location: 4369814-4370116 bp Ori: AOE86630.1 Feature: domain Description: GIIM Note: maturase Location: 4369820-4369973 bp Feature: domain Description: GIIM Note: maturase Location: 4369820-4369973 bp Feature: gene Location: 4370177-4370779 bp Ori: AOE86631.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4370438-4370648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4370438-4370648 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4370651-4370747 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4370651 -4370747 bp Feature: gene Location: 4371287-4372600 bp Ori: AOE86632.1 Feature: domain Description: OprP Location: 4371290-4372598 bp Feature: domain Description: OprP Location: 4371 290-4372598 bp Feature: gene Location: 4372883-4373116 bp Ori: AOE86633.1 Feature: domain Description: zf-HC2 Location: 4372895-4372997 bp Feature: domain Description: zf-HC2 Location: 4372895-4372997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), RVT-GII, COG1483 (Predicted ATPase, AAA+ superfamily ), LGT_LGT_LGT_TIGR03299, MFS_MdfA_MDR_like (cd17320), Response_reg (pfam00072), PRK09330 (cell division protein FtsZ; Validated)
LpxC (pfam03331), group_II_RT_mat (TIGR04416), GIIM (pfam08388), DciA, MFS_ExuT_GudP_like (cd17319), MR_like_2 (cd03327), ABALDH (TIGR03374), AcrR (COG1309), DUF836 (pfam05768), RVT-Retrons
HtpG (COG0326), YhaK (COG1741), YhfA (COG1765), HmoA (COG2329), OprP (COG3746), zf-HC2 (pfam13490)