myRT

myRT report for GCA_001709275.1_ASM170927v1

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Seq: CP016923.1 Klebsiella pneumoniae isolate 11 chromosome, complete genome (5341571 bp)
Overview 1 RT 1: 100661-107144 bp 2 RT 2: 1156077-1164695 bp 3 RT 3: 4002562-4006656 bp 4 RT 4: 5246063-5251459 bp Neighborhood of RT #1 [100661, 107146] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #2 [1156077, 1164712] YqgA PRK09692 RVT-UG4 FimD FimC Neighborhood of RT #3 [4002562, 4006850] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 Neighborhood of RT #4 [5246063, 5251459] umuC PRK10276 RVT-GII Feature: gene Location: 100661-101719 bp Ori: AOF02900.1 Feature: domain Description: YccC Location: 100667-101705 bp Feature: domain Description: YccC Location: 1 00667-1 01 705 bp Feature: gene Location: 101818-102291 bp Ori: AOF02901.1 Feature: domain Description: PRK10016 Location: 101821-102280 bp Feature: domain Description: PRK1 001 6 Location: 1 01 821 -1 02280 bp Feature: gene Location: 102373-103857 bp Ori: AOF02902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102775-103465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02775-1 03465 bp Feature: gene Location: 104378-105541 bp Ori: AOF07664.1 Feature: domain Description: dacD Location: 104381-105536 bp Feature: domain Description: dacD Location: 1 04381 -1 05536 bp Feature: gene Location: 105722-107146 bp Ori: AOF02903.1 Feature: domain Description: SbcB Location: 105728-107144 bp Feature: domain Description: SbcB Location: 1 05728-1 071 44 bp Feature: gene Location: 1156077-1156790 bp Ori: AOF03851.1 Feature: domain Description: YqgA Location: 1156083-1156785 bp Feature: domain Description: YqgA Location: 1 1 56083-1 1 56785 bp Feature: gene Location: 1157314-1158552 bp Feature: domain Description: PRK09692 Location: 1157320-1158502 bp Feature: domain Description: PRK09692 Location: 1 1 57320-1 1 58502 bp Feature: gene Location: 1159229-1161310 bp Ori: AOF03852.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1159640-1160084 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 59640-1 1 60084 bp Feature: gene Location: 1161307-1163901 bp Ori: AOF03853.1 Feature: domain Description: FimD Location: 1161349-1163890 bp Feature: domain Description: FimD Location: 1 1 61 349-1 1 63890 bp Feature: gene Location: 1163948-1164712 bp Ori: AOF03854.1 Feature: domain Description: FimC Location: 1163993-1164695 bp Feature: domain Description: FimC Location: 1 1 63993-1 1 64695 bp Feature: gene Location: 4002562-4003701 bp Ori: AOF06394.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4002745-4003645 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4002745-4003645 bp Feature: gene Location: 4003872-4004114 bp Ori: AOF06395.1 Feature: domain Description: DinI Location: 4003923-4004103 bp Feature: domain Description: DinI Location: 4003923-40041 03 bp Feature: gene Location: 4004732-4006216 bp Ori: AOF06396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4005134-4005824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40051 34-4005824 bp Feature: gene Location: 4006294-4006533 bp Feature: gene Location: 4006533-4006850 bp Ori: AOF06398.1 Feature: domain Description: PRK10276 Location: 4006539-4006656 bp Feature: domain Description: PRK1 0276 Location: 4006539-4006656 bp Feature: gene Location: 5246063-5247328 bp Ori: AOF07554.1 Feature: domain Description: umuC Location: 5246066-5247326 bp Feature: domain Description: umuC Location: 5246066-5247326 bp Feature: gene Location: 5247331-5247750 bp Ori: AOF07555.1 Feature: domain Description: PRK10276 Location: 5247334-5247745 bp Feature: domain Description: PRK1 0276 Location: 5247334-5247745 bp Feature: gene Location: 5247829-5249313 bp Ori: AOF07556.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5248231-5248921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5248231 -5248921 bp Feature: gene Location: 5250018-5250347 bp Feature: gene Location: 5250725-5251459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925), YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)
GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP016921.1 Klebsiella pneumoniae isolate 11 plasmid pIncHI1B_DHQP1300920, complete sequence (283369 bp)
Overview 1 RT 1: 83037-88050 bp 2 RT 2: 225920-234312 bp Neighborhood of RT #1 [83037, 88050] HHA RVT-GII INT_Cre_C Neighborhood of RT #2 [225920, 234320] DinG PRK08074 DinG cas7_csf2 RVT-GII PRK10276 umuC Feature: gene Location: 83037-84104 bp Feature: gene Location: 84190-84444 bp Ori: AOF02541.1 Feature: domain Description: HHA Location: 84241-84424 bp Feature: domain Description: HHA Location: 842 41-8442 4 bp Feature: gene Location: 84961-86445 bp Ori: AOF02542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85363-86053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85363-86053 bp Feature: gene Location: 86531-87667 bp Ori: AOF02543.1 Feature: domain Description: INT_Cre_C Location: 86954-87608 bp Feature: domain Description: INT_Cre_C Location: 86954-87608 bp Feature: gene Location: 87733-88050 bp Feature: gene Location: 225920-227794 bp Ori: AOF02667.1 Feature: domain Description: DinG Location: 225953-226454 bp Feature: domain Description: DinG Location: 2 2 5953-2 2 6454 bp Feature: domain Description: PRK08074 Location: 226457-226646 bp Feature: domain Description: PRK08074 Location: 2 2 6457-2 2 6646 bp Feature: domain Description: DinG Location: 226973-227678 bp Feature: domain Description: DinG Location: 2 2 6973-2 2 7678 bp Feature: gene Location: 228740-229531 bp Ori: AOF02668.1 Feature: domain Description: cas7_csf2 Location: 229061-229475 bp Feature: domain Description: cas7_csf2 Location: 2 2 9061-2 2 9475 bp Feature: gene Location: 231057-232541 bp Ori: AOF02669.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231459-232149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 31459-2 32 149 bp Feature: gene Location: 232627-233049 bp Ori: AOF02670.1 Feature: domain Description: PRK10276 Location: 232633-233035 bp Feature: domain Description: PRK102 76 Location: 2 32 633-2 33035 bp Feature: gene Location: 233049-234320 bp Ori: AOF02671.1 Feature: domain Description: umuC Location: 233052-234312 bp Feature: domain Description: umuC Location: 2 33052 -2 34312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799), DinG (COG1199), PRK08074 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), cas7_csf2 (TIGR03115), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP016919.1 Klebsiella pneumoniae isolate 11 plasmid pIncR_DHQP1300920, complete sequence (70830 bp)
Overview 1 RT 1: 2205-7230 bp Neighborhood of RT #1 [2205, 7235] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 2205-3476 bp Ori: AOF02384.1 Feature: domain Description: umuC Location: 2208-3468 bp Feature: domain Description: umuC Location: 2208-3 468 bp Feature: gene Location: 3476-3907 bp Ori: AOF02385.1 Feature: domain Description: PRK10276 Location: 3527-3890 bp Feature: domain Description: PRK10276 Location: 3 527-3 890 bp Feature: gene Location: 4316-5800 bp Ori: AOF02386.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4718-5408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4718-5408 bp Feature: gene Location: 5793-6062 bp Feature: gene Location: 6270-7235 bp Ori: AOF02388.1 Feature: domain Description: ArdC Location: 6396-7230 bp Feature: domain Description: ArdC Location: 63 96-723 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: CP016922.1 Klebsiella pneumoniae isolate 11 plasmid pIncFIB_DHQP1300920, complete sequence (103694 bp)
Overview 1 RT 1: 43941-48932 bp Neighborhood of RT #1 [43941, 48937] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 43941-44366 bp Ori: AOF02790.1 Feature: domain Description: Antirestrict Location: 44076-44364 bp Feature: domain Description: Antirestrict Location: 4 4 076-4 4 364 bp Feature: gene Location: 44887-45117 bp Feature: gene Location: 45351-46835 bp Ori: AOF02792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45753-46443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5753-4 64 4 3 bp Feature: gene Location: 47241-47666 bp Ori: AOF02793.1 Feature: domain Description: PRK10276 Location: 47244-47652 bp Feature: domain Description: PRK10276 Location: 4 724 4 -4 7652 bp Feature: gene Location: 47666-48937 bp Ori: AOF02794.1 Feature: domain Description: umuC Location: 47669-48932 bp Feature: domain Description: umuC Location: 4 7669-4 8932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)