myRT

myRT report for GCA_001712815.1_ASM171281v1

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Seq: CP012047.1 Tetragenococcus halophilus strain MJ4, complete genome (2389470 bp)
Overview 1 RT 1: 131709-138000 bp 2 RT 2: 762536-768380 bp 3 RT 3: 934106-942004 bp 4 RT 4: 988117-996722 bp 5 RT 5: 1670794-1677442 bp 6 RT 6: 1908913-1916533 bp 7 RT 7: 2079493-2084299 bp 8 RT 8: 2314624-2321024 bp Neighborhood of RT #1 [131709, 138143] moaA RVT-GII GIIM DDE_Tnp_1_4 HTH_28 HTH_28 HTH_28 Neighborhood of RT #2 [762536, 768403] FepC TroA_a RVT-GII GIIM SnoaL_2 PRK09441 Neighborhood of RT #3 [934106, 942006] PRK08588 PRK08588 DDE_5 RVT-GII GIIM PTS-IIBC-alpha GH4_GlvA_pagL_like Neighborhood of RT #4 [988117, 996757] LemA RVT-GII GIIM RVT-GII GIIM PRK08599 hrcA Neighborhood of RT #5 [1670794, 1677447] YjaZ RVT-GII GIIM PFL2_DhaB_BssA GlpR Neighborhood of RT #6 [1908913, 1916547] am_tr_V_EF2568 sufB RVT-GII GIIM COG1878 PRK09722 Neighborhood of RT #7 [2079493, 2084304] ruvB RuvA RVT-GII GIIM RAYT PRK14018 Neighborhood of RT #8 [2314624, 2321044] Mga GlcU RVT-GII GIIM PRK12451 ElaA Feature: gene Location: 131709-132716 bp Ori: AOF48034.1 Feature: domain Description: moaA Location: 131733-132714 bp Feature: domain Description: moaA Location: 1 31 733-1 3271 4 bp Feature: gene Location: 133057-133320 bp Feature: gene Location: 134141-135439 bp Ori: AOF48036.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134342-134960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34342-1 34960 bp Feature: domain Description: GIIM Note: maturase Location: 135017-135224 bp Feature: domain Description: GIIM Note: maturase Location: 1 3501 7-1 35224 bp Feature: gene Location: 135905-137227 bp Ori: AOF48037.1 Feature: domain Description: DDE_Tnp_1_4 Location: 135941-137222 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 35941 -1 37222 bp Feature: gene Location: 137475-138143 bp Ori: AOF49942.1 Feature: domain Description: HTH_28 Location: 137496-137643 bp Feature: domain Description: HTH_28 Location: 1 37496-1 37643 bp Feature: domain Description: HTH_28 Location: 137670-137790 bp Feature: domain Description: HTH_28 Location: 1 37670-1 37790 bp Feature: domain Description: HTH_28 Location: 137853-138000 bp Feature: domain Description: HTH_28 Location: 1 37853-1 38000 bp Feature: gene Location: 762536-763300 bp Ori: AOF48552.1 Feature: domain Description: FepC Location: 762542-763274 bp Feature: domain Description: FepC Location: 762542-763274 bp Feature: gene Location: 763319-764353 bp Ori: AOF48553.1 Feature: domain Description: TroA_a Location: 763487-764330 bp Feature: domain Description: TroA_a Location: 763487-764330 bp Feature: gene Location: 764991-766289 bp Ori: AOF48554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765192-765810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7651 92-76581 0 bp Feature: domain Description: GIIM Note: maturase Location: 765867-766074 bp Feature: domain Description: GIIM Note: maturase Location: 765867-766074 bp Feature: gene Location: 766458-766838 bp Ori: AOF48555.1 Feature: domain Description: SnoaL_2 Location: 766485-766794 bp Feature: domain Description: SnoaL_2 Location: 766485-766794 bp Feature: gene Location: 766931-768403 bp Ori: AOF48556.1 Feature: domain Description: PRK09441 Location: 766943-768380 bp Feature: domain Description: PRK09441 Location: 766943-768380 bp Feature: gene Location: 934106-935323 bp Ori: AOF48688.1 Feature: domain Description: PRK08588 Location: 934118-935057 bp Feature: domain Description: PRK08588 Location: 9341 1 8-935057 bp Feature: domain Description: PRK08588 Location: 935108-935321 bp Feature: domain Description: PRK08588 Location: 9351 08-935321 bp Feature: gene Location: 935540-936373 bp Ori: AOF48689.1 Feature: domain Description: DDE_5 Location: 935765-936317 bp Feature: domain Description: DDE_5 Location: 935765-93631 7 bp Feature: gene Location: 936440-937738 bp Ori: AOF48690.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936641-937259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936641 -937259 bp Feature: domain Description: GIIM Note: maturase Location: 937316-937523 bp Feature: domain Description: GIIM Note: maturase Location: 93731 6-937523 bp Feature: gene Location: 939057-940664 bp Ori: AOF48691.1 Feature: domain Description: PTS-IIBC-alpha Location: 939063-940629 bp Feature: domain Description: PTS-IIBC-alpha Location: 939063-940629 bp Feature: gene Location: 940675-942006 bp Ori: AOF49996.1 Feature: domain Description: GH4_GlvA_pagL_like Location: 940690-942004 bp Feature: domain Description: GH4_GlvA_pagL_like Location: 940690-942004 bp Feature: gene Location: 988117-988356 bp Feature: gene Location: 988508-989098 bp Ori: AOF48733.1 Feature: domain Description: LemA Location: 988538-989072 bp Feature: domain Description: LemA Location: 988538-989072 bp Feature: gene Location: 991018-992307 bp Ori: AOF48734.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 991234-991849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 991 234-991 849 bp Feature: domain Description: GIIM Note: maturase Location: 991909-992116 bp Feature: domain Description: GIIM Note: maturase Location: 991 909-9921 1 6 bp Feature: gene Location: 992886-994184 bp Ori: AOF48735.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993087-993705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993087-993705 bp Feature: domain Description: GIIM Note: maturase Location: 993762-993969 bp Feature: domain Description: GIIM Note: maturase Location: 993762-993969 bp Feature: gene Location: 994347-995498 bp Ori: AOF48736.1 Feature: domain Description: PRK08599 Location: 994371-995493 bp Feature: domain Description: PRK08599 Location: 994371 -995493 bp Feature: gene Location: 995717-996757 bp Ori: AOF49997.1 Feature: domain Description: hrcA Location: 995723-996722 bp Feature: domain Description: hrcA Location: 995723-996722 bp Feature: gene Location: 1670794-1671696 bp Ori: AOF49314.1 Feature: domain Description: YjaZ Location: 1670809-1671688 bp Feature: domain Description: YjaZ Location: 1 670809-1 671 688 bp Feature: gene Location: 1671868-1672050 bp Feature: gene Location: 1672291-1673589 bp Ori: AOF49316.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672492-1673110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 672492-1 6731 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 1673167-1673374 bp Feature: domain Description: GIIM Note: maturase Location: 1 6731 67-1 673374 bp Feature: gene Location: 1674141-1676579 bp Ori: AOF49317.1 Feature: domain Description: PFL2_DhaB_BssA Location: 1674201-1676568 bp Feature: domain Description: PFL2_DhaB_BssA Location: 1 674201 -1 676568 bp Feature: gene Location: 1676704-1677447 bp Ori: AOF49318.1 Feature: domain Description: GlpR Location: 1676713-1677442 bp Feature: domain Description: GlpR Location: 1 67671 3-1 677442 bp Feature: gene Location: 1908913-1910094 bp Ori: AOF49519.1 Feature: domain Description: am_tr_V_EF2568 Location: 1908952-1910074 bp Feature: domain Description: am_tr_V_EF2568 Location: 1 908952-1 91 0074 bp Feature: gene Location: 1911319-1912713 bp Ori: AOF49520.1 Feature: domain Description: sufB Location: 1911346-1912684 bp Feature: domain Description: sufB Location: 1 91 1 346-1 91 2684 bp Feature: gene Location: 1913107-1914405 bp Ori: AOF49521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1913308-1913926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 3308-1 91 3926 bp Feature: domain Description: GIIM Note: maturase Location: 1913983-1914190 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 3983-1 91 41 90 bp Feature: gene Location: 1914944-1915693 bp Ori: AOF49522.1 Feature: domain Description: COG1878 Location: 1914980-1915679 bp Feature: domain Description: COG1 878 Location: 1 91 4980-1 91 5679 bp Feature: gene Location: 1915852-1916547 bp Ori: AOF49523.1 Feature: domain Description: PRK09722 Location: 1915861-1916533 bp Feature: domain Description: PRK09722 Location: 1 91 5861 -1 91 6533 bp Feature: gene Location: 2079493-2080500 bp Ori: AOF49668.1 Feature: domain Description: ruvB Location: 2079526-2080477 bp Feature: domain Description: ruvB Location: 2079526-2080477 bp Feature: gene Location: 2080534-2081127 bp Ori: AOF50040.1 Feature: domain Description: RuvA Location: 2080537-2081116 bp Feature: domain Description: RuvA Location: 2080537-2081 1 1 6 bp Feature: gene Location: 2081265-2082563 bp Ori: AOF49669.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081466-2082084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081 466-2082084 bp Feature: domain Description: GIIM Note: maturase Location: 2082141-2082348 bp Feature: domain Description: GIIM Note: maturase Location: 20821 41 -2082348 bp Feature: gene Location: 2083214-2083669 bp Ori: AOF49670.1 Feature: domain Description: RAYT Location: 2083232-2083613 bp Feature: domain Description: RAYT Location: 2083232-208361 3 bp Feature: gene Location: 2083867-2084304 bp Ori: AOF49671.1 Feature: domain Description: PRK14018 Location: 2083876-2084299 bp Feature: domain Description: PRK1 401 8 Location: 2083876-2084299 bp Feature: gene Location: 2314624-2315634 bp Ori: AOF49869.1 Feature: domain Description: Mga Location: 2314861-2315092 bp Feature: domain Description: Mga Location: 231 4861 -231 5092 bp Feature: gene Location: 2315689-2316555 bp Ori: AOF49870.1 Feature: domain Description: GlcU Location: 2315695-2316553 bp Feature: domain Description: GlcU Location: 231 5695-231 6553 bp Feature: gene Location: 2316718-2318007 bp Ori: AOF49871.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2316934-2317549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 6934-231 7549 bp Feature: domain Description: GIIM Note: maturase Location: 2317609-2317816 bp Feature: domain Description: GIIM Note: maturase Location: 231 7609-231 781 6 bp Feature: gene Location: 2318637-2320328 bp Ori: AOF49872.1 Feature: domain Description: PRK12451 Location: 2318640-2320326 bp Feature: domain Description: PRK1 2451 Location: 231 8640-2320326 bp Feature: gene Location: 2320652-2321044 bp Ori: AOF50052.1 Feature: domain Description: ElaA Location: 2320664-2321024 bp Feature: domain Description: ElaA Location: 2320664-2321 024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT moaA (TIGR02666), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701), HTH_28 (pfam13518), FepC (COG1120), TroA_a (cd01148), SnoaL_2 (pfam12680), PRK09441 (cytoplasmic alpha-amylase; Reviewed), PRK08588 (succinyl-diaminopimelate desuccinylase; Reviewed)
DDE_5 (pfam13546), PTS-IIBC-alpha (TIGR02005), GH4_GlvA_pagL_like (cd05298), LemA (pfam04011), PRK08599 (oxygen-independent coproporphyrinogen III oxidase), hrcA (TIGR00331), YjaZ (COG5504), PFL2_DhaB_BssA (cd01677), GlpR (COG1349), am_tr_V_EF2568 (TIGR01977)
sufB (TIGR01980), COG1878 (Kynurenine formamidase ), PRK09722 (allulose-6-phosphate 3-epimerase; Provisional), ruvB (TIGR00635), RuvA (COG0632), RAYT (COG1943), PRK14018 (bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB), Mga (pfam05043), GlcU (COG4975), PRK12451 (arginyl-tRNA synthetase; Reviewed)
ElaA (COG2153)