myRT

myRT report for GCA_001717525.2_ASM171752v2

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Seq: CP017038.2 Tannerella sp. oral taxon BU063, complete genome (2973544 bp)
Overview 1 RT 1: 221087-226982 bp 2 RT 2: 1067912-1075468 bp 3 RT 3: 2158408-2164376 bp 4 RT 4: 2888805-2893948 bp 5 RT 5: 2914184-2923484 bp 6 RT 6: 2927223-2933819 bp Neighborhood of RT #1 [221087, 226981] DUF4141 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #2 [1067912, 1075470] PRK05218 RVT_N RVT-GII GIIM dnaK Neighborhood of RT #3 [2158408, 2164376] DDE_Tnp_1_3 RVT_N RVT-GII GIIM Neighborhood of RT #4 [2888805, 2893948] AbiF RVT_N RVT-GII GIIM Neighborhood of RT #5 [2914184, 2923484] PRK08644 TraG-D_C RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM YWFCY Neighborhood of RT #6 [2927223, 2933878] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 221087-221716 bp Ori: AOH39835.1 Feature: domain Description: DUF4141 Location: 221102-221255 bp Feature: domain Description: DUF41 41 Location: 221 1 02-221 255 bp Feature: gene Location: 222070-223764 bp Feature: domain Description: Bac_Flav_CT_G Location: 222073-223747 bp Feature: domain Description: Bac_Flav_CT_G Location: 222073-223747 bp Feature: gene Location: 223859-225541 bp Ori: AOH39836.1 Gene: ltrA Feature: domain Description: RVT_N Location: 223922-224165 bp Feature: domain Description: RVT_N Location: 223922-2241 65 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224210-224858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22421 0-224858 bp Feature: domain Description: GIIM Note: maturase Location: 224909-225143 bp Feature: domain Description: GIIM Note: maturase Location: 224909-2251 43 bp Feature: gene Location: 225587-225772 bp Feature: gene Location: 226166-226981 bp Feature: domain Description: Bac_Flav_CT_G Location: 226169-226982 bp Feature: domain Description: Bac_Flav_CT_G Location: 2261 69-226982 bp Feature: gene Location: 1067912-1069972 bp Ori: AOH40445.1 Feature: domain Description: PRK05218 Location: 1067924-1069967 bp Feature: domain Description: PRK0521 8 Location: 1 067924-1 069967 bp Feature: gene Location: 1071227-1071412 bp Feature: gene Location: 1071458-1073140 bp Ori: AOH40446.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1071521-1071764 bp Feature: domain Description: RVT_N Location: 1 071 521 -1 071 764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1071809-1072457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 071 809-1 072457 bp Feature: domain Description: GIIM Note: maturase Location: 1072508-1072742 bp Feature: domain Description: GIIM Note: maturase Location: 1 072508-1 072742 bp Feature: gene Location: 1073124-1073234 bp Feature: gene Location: 1073563-1075470 bp Ori: AOH40447.1 Feature: domain Description: dnaK Location: 1073566-1075468 bp Feature: domain Description: dnaK Location: 1 073566-1 075468 bp Feature: gene Location: 2158408-2159322 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2158738-2159203 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 21 58738-21 59203 bp Feature: gene Location: 2160571-2161653 bp Feature: gene Location: 2161655-2163322 bp Ori: AOH41213.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2161709-2161952 bp Feature: domain Description: RVT_N Location: 21 61 709-21 61 952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2161997-2162645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 61 997-21 62645 bp Feature: domain Description: GIIM Note: maturase Location: 2162699-2162930 bp Feature: domain Description: GIIM Note: maturase Location: 21 62699-21 62930 bp Feature: gene Location: 2163288-2163491 bp Feature: gene Location: 2163975-2164376 bp Feature: gene Location: 2888805-2889734 bp Ori: AOH41750.1 Feature: domain Description: AbiF Location: 2888814-2889711 bp Feature: domain Description: AbiF Location: 288881 4-288971 1 bp Feature: gene Location: 2889779-2890981 bp Feature: gene Location: 2890983-2892650 bp Ori: AOH41751.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2891037-2891280 bp Feature: domain Description: RVT_N Location: 2891 037-2891 280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891325-2891973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891 325-2891 973 bp Feature: domain Description: GIIM Note: maturase Location: 2892027-2892258 bp Feature: domain Description: GIIM Note: maturase Location: 2892027-2892258 bp Feature: gene Location: 2892616-2892819 bp Feature: gene Location: 2893307-2893948 bp Feature: gene Location: 2914184-2914954 bp Feature: domain Description: PRK08644 Location: 2914220-2914481 bp Feature: domain Description: PRK08644 Location: 291 4220-291 4481 bp Feature: gene Location: 2915045-2916043 bp Ori: AWB15222.1 Feature: domain Description: TraG-D_C Location: 2915426-2915711 bp Feature: domain Description: TraG-D_C Location: 291 5426-291 571 1 bp Feature: gene Location: 2916004-2917824 bp Ori: AOH42007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2916271-2917093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 6271 -291 7093 bp Feature: domain Description: Intron_maturas2 Location: 2917171-2917471 bp Feature: domain Description: Intron_maturas2 Location: 291 71 71 -291 7471 bp Feature: domain Description: HNHc Note: nucleases Location: 2917651-2917792 bp Feature: domain Description: HNHc Note: nucleases Location: 291 7651 -291 7792 bp Feature: gene Location: 2918368-2918718 bp Feature: gene Location: 2918693-2920378 bp Ori: AOH41768.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2918750-2918993 bp Feature: domain Description: RVT_N Location: 291 8750-291 8993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2919038-2919686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 9038-291 9686 bp Feature: domain Description: GIIM Note: maturase Location: 2919740-2919971 bp Feature: domain Description: GIIM Note: maturase Location: 291 9740-291 9971 bp Feature: gene Location: 2921011-2921934 bp Ori: AWB15223.1 Feature: domain Description: YWFCY Location: 2921017-2921194 bp Feature: domain Description: YWFCY Location: 2921 01 7-2921 1 94 bp Feature: gene Location: 2922244-2923484 bp Feature: gene Location: 2927223-2928038 bp Feature: domain Description: Bac_Flav_CT_G Location: 2927226-2928039 bp Feature: domain Description: Bac_Flav_CT_G Location: 2927226-2928039 bp Feature: gene Location: 2928432-2928617 bp Feature: gene Location: 2928663-2930345 bp Ori: AOH41773.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2928726-2928969 bp Feature: domain Description: RVT_N Location: 2928726-2928969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2929014-2929662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292901 4-2929662 bp Feature: domain Description: GIIM Note: maturase Location: 2929713-2929947 bp Feature: domain Description: GIIM Note: maturase Location: 292971 3-2929947 bp Feature: gene Location: 2930440-2932134 bp Feature: domain Description: Bac_Flav_CT_G Location: 2930443-2932117 bp Feature: domain Description: Bac_Flav_CT_G Location: 2930443-29321 1 7 bp Feature: gene Location: 2932640-2933878 bp Ori: AOH41774.1 Feature: domain Description: Arm-DNA-bind_5 Location: 2932673-2932928 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2932673-2932928 bp Feature: domain Description: Phage_int_SAM_5 Location: 2932970-2933258 bp Feature: domain Description: Phage_int_SAM_5 Location: 2932970-2933258 bp Feature: domain Description: INTN1_C_like Location: 2933330-2933819 bp Feature: domain Description: INTN1 _C_like Location: 2933330-293381 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK05218 (heat shock protein 90; Provisional), dnaK (PRK00290), DDE_Tnp_1_3 (pfam13612), AbiF (COG4823), PRK08644 (sulfur carrier protein ThiS adenylyltransferase ThiF)
TraG-D_C (pfam12696), Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)