myRT

myRT report for GCA_001718575.1_ASM171857v1

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Seq: CP013406.1 Burkholderia lata strain FL-7-5-30-S1-D0 chromosome 2, complete sequence (3386917 bp)
Overview 1 RT 1: 1296668-1304036 bp 2 RT 2: 2264184-2270389 bp Neighborhood of RT #1 [1296668, 1304044] YraI IS285 RVT-GII GIIM PRK12448 AllD Neighborhood of RT #2 [2264184, 2270412] DUF4148 PRK05753 RVT-GII GIIM gram_neg_porins HxlR Feature: gene Location: 1296668-1297483 bp Ori: AOJ41747.1 Feature: domain Description: YraI Location: 1296716-1297079 bp Feature: domain Description: YraI Location: 1 29671 6-1 297079 bp Feature: gene Location: 1297746-1299005 bp Ori: AOJ41748.1 Feature: domain Description: IS285 Location: 1297851-1298994 bp Feature: domain Description: IS285 Location: 1 297851 -1 298994 bp Feature: gene Location: 1299009-1300334 bp Ori: AOJ41749.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1299345-1299960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 299345-1 299960 bp Feature: domain Description: GIIM Note: maturase Location: 1300017-1300221 bp Feature: domain Description: GIIM Note: maturase Location: 1 30001 7-1 300221 bp Feature: gene Location: 1300832-1302691 bp Ori: AOJ41750.1 Feature: domain Description: PRK12448 Location: 1300838-1302683 bp Feature: domain Description: PRK1 2448 Location: 1 300838-1 302683 bp Feature: gene Location: 1303022-1304044 bp Ori: AOJ41751.1 Feature: domain Description: AllD Location: 1303046-1304036 bp Feature: domain Description: AllD Location: 1 303046-1 304036 bp Feature: gene Location: 2264184-2264513 bp Ori: AOJ42471.1 Feature: domain Description: DUF4148 Location: 2264187-2264349 bp Feature: domain Description: DUF41 48 Location: 22641 87-2264349 bp Feature: gene Location: 2265024-2265422 bp Ori: AOJ42472.1 Feature: domain Description: PRK05753 Location: 2265048-2265417 bp Feature: domain Description: PRK05753 Location: 2265048-226541 7 bp Feature: gene Location: 2265614-2266984 bp Ori: AOJ42473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265950-2266565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265950-2266565 bp Feature: domain Description: GIIM Note: maturase Location: 2266622-2266826 bp Feature: domain Description: GIIM Note: maturase Location: 2266622-2266826 bp Feature: gene Location: 2267430-2268554 bp Ori: AOJ42474.1 Feature: domain Description: gram_neg_porins Location: 2267496-2268552 bp Feature: domain Description: gram_neg_porins Location: 2267496-2268552 bp Feature: gene Location: 2270026-2270412 bp Ori: AOJ42475.1 Feature: domain Description: HxlR Location: 2270071-2270389 bp Feature: domain Description: HxlR Location: 2270071 -2270389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YraI (COG4991), IS285 (COG3328), RVT-GII, GIIM (pfam08388), PRK12448 (dihydroxy-acid dehydratase; Provisional), AllD (TIGR03175), DUF4148 (pfam13663), PRK05753 (nucleoside diphosphate kinase regulator; Provisional), gram_neg_porins (cd00342), HxlR (pfam01638)

Seq: CP013404.1 Burkholderia lata strain FL-7-5-30-S1-D0 chromosome 1, complete sequence (3756401 bp)
Overview 1 RT 1: 142218-149532 bp 2 RT 2: 700237-706852 bp 3 RT 3: 954618-959946 bp 4 RT 4: 1117022-1123549 bp 5 RT 5: 3021089-3026384 bp Neighborhood of RT #1 [142218, 149537] atpD atpC RVT-GII GIIM PRK08315 PBP2_PheC Neighborhood of RT #2 [700237, 706893] proA COG1981 RVT-GII GIIM RpiR PRK09054 Neighborhood of RT #3 [954618, 959951] groES groEL RVT-GII GIIM Phos_pyr_kin YgaK Neighborhood of RT #4 [1117022, 1123557] GATase1_2 DUF2968 RVT-GII GIIM PRK15075 Neighborhood of RT #5 [3021089, 3026386] DUF3579 PRK00779 RVT-GII GIIM murB PRK05412 Feature: gene Location: 142218-143612 bp Ori: AOJ36510.1 Feature: domain Description: atpD Location: 142242-143607 bp Feature: domain Description: atpD Location: 142 2 42 -143607 bp Feature: gene Location: 143763-144188 bp Ori: AOJ36511.1 Feature: domain Description: atpC Location: 143766-144162 bp Feature: domain Description: atpC Location: 143766-144162 bp Feature: gene Location: 144623-145993 bp Ori: AOJ36512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144959-145574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144959-145574 bp Feature: domain Description: GIIM Note: maturase Location: 145631-145835 bp Feature: domain Description: GIIM Note: maturase Location: 145631-145835 bp Feature: gene Location: 146286-148013 bp Ori: AOJ36513.1 Feature: domain Description: PRK08315 Location: 146337-147999 bp Feature: domain Description: PRK08315 Location: 146337-147999 bp Feature: gene Location: 148737-149537 bp Ori: AOJ36514.1 Feature: domain Description: PBP2_PheC Location: 148842-149532 bp Feature: domain Description: PBP2 _PheC Location: 148842 -149532 bp Feature: gene Location: 700237-701508 bp Ori: AOJ36975.1 Feature: domain Description: proA Location: 700249-701503 bp Feature: domain Description: proA Location: 7002 49-701503 bp Feature: gene Location: 701534-701950 bp Ori: AOJ36976.1 Feature: domain Description: COG1981 Location: 701537-701948 bp Feature: domain Description: COG1981 Location: 701537-701948 bp Feature: gene Location: 702401-703771 bp Ori: AOJ36977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702737-703352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702 737-703352 bp Feature: domain Description: GIIM Note: maturase Location: 703409-703613 bp Feature: domain Description: GIIM Note: maturase Location: 703409-703613 bp Feature: gene Location: 703894-704742 bp Ori: AOJ36978.1 Feature: domain Description: RpiR Location: 703897-704719 bp Feature: domain Description: RpiR Location: 703897-704719 bp Feature: gene Location: 705037-706893 bp Ori: AOJ36979.1 Feature: domain Description: PRK09054 Location: 705049-706852 bp Feature: domain Description: PRK09054 Location: 705049-706852 bp Feature: gene Location: 954618-954911 bp Ori: AOJ37175.1 Feature: domain Description: groES Location: 954621-954903 bp Feature: domain Description: groES Location: 95462 1-954903 bp Feature: gene Location: 954958-956598 bp Ori: AOJ37176.1 Gene: groEL Feature: domain Description: groEL Location: 954961-956587 bp Feature: domain Description: groEL Location: 954961-956587 bp Feature: gene Location: 957093-958484 bp Ori: AOJ37177.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957423-958041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95742 3-958041 bp Feature: domain Description: GIIM Note: maturase Location: 958089-958311 bp Feature: domain Description: GIIM Note: maturase Location: 958089-958311 bp Feature: gene Location: 958660-959526 bp Ori: AOJ37178.1 Feature: domain Description: Phos_pyr_kin Location: 958708-959425 bp Feature: domain Description: Phos_pyr_kin Location: 958708-95942 5 bp Feature: gene Location: 959781-959951 bp Ori: AOJ37179.1 Feature: domain Description: YgaK Location: 959790-959946 bp Feature: domain Description: YgaK Location: 959790-959946 bp Feature: gene Location: 1117022-1118203 bp Ori: AOJ37317.1 Feature: domain Description: GATase1_2 Location: 1117490-1118129 bp Feature: domain Description: GATase1_2 Location: 1117490-111812 9 bp Feature: gene Location: 1118319-1119011 bp Ori: AOJ37318.1 Feature: domain Description: DUF2968 Location: 1118475-1118988 bp Feature: domain Description: DUF2 968 Location: 1118475-1118988 bp Feature: gene Location: 1119484-1120875 bp Ori: AOJ37319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119814-1120432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119814-112 0432 bp Feature: domain Description: GIIM Note: maturase Location: 1120480-1120702 bp Feature: domain Description: GIIM Note: maturase Location: 112 0480-112 0702 bp Feature: gene Location: 1120959-1121909 bp Feature: gene Location: 1122262-1123557 bp Ori: AOJ39531.1 Feature: domain Description: PRK15075 Location: 1122271-1123549 bp Feature: domain Description: PRK15075 Location: 112 2 2 71-112 3549 bp Feature: gene Location: 3021089-3021409 bp Ori: AOJ38864.1 Feature: domain Description: DUF3579 Location: 3021110-3021374 bp Feature: domain Description: DUF3579 Location: 302 1110-302 1374 bp Feature: gene Location: 3021823-3022752 bp Ori: AOJ38865.1 Feature: domain Description: PRK00779 Location: 3021838-3022732 bp Feature: domain Description: PRK00779 Location: 302 1838-302 2 732 bp Feature: gene Location: 3022847-3024238 bp Ori: AOJ38866.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3023177-3023795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 3177-302 3795 bp Feature: domain Description: GIIM Note: maturase Location: 3023843-3024065 bp Feature: domain Description: GIIM Note: maturase Location: 302 3843-302 4065 bp Feature: gene Location: 3024714-3025763 bp Ori: AOJ38867.1 Feature: domain Description: murB Location: 3024756-3025758 bp Feature: domain Description: murB Location: 302 4756-302 5758 bp Feature: gene Location: 3025901-3026386 bp Ori: AOJ38868.1 Feature: domain Description: PRK05412 Location: 3025904-3026384 bp Feature: domain Description: PRK05412 Location: 302 5904-302 6384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT atpD (TIGR01039), atpC (PRK14736), RVT-GII, GIIM (pfam08388), PRK08315 (AMP-binding domain protein; Validated), PBP2_PheC (cd01069), proA (TIGR00407), COG1981 (Uncharacterized membrane protein ), RpiR (COG1737), PRK09054 (phosphogluconate dehydratase; Validated)
groES (PRK14533), groEL (PRK12852), Phos_pyr_kin (pfam08543), YgaK (COG1773), GATase1_2 (cd01745), DUF2968 (pfam11180), PRK15075 (tricarballylate/proton symporter TcuC), DUF3579 (pfam12112), PRK00779 (ornithine carbamoyltransferase; Provisional), murB (TIGR00179)
PRK05412 (putative nucleotide-binding protein; Reviewed)

Seq: CP013405.1 Burkholderia lata strain FL-7-5-30-S1-D0 chromosome 3, complete sequence (1211521 bp)
Overview 1 RT 1: 617109-622439 bp Neighborhood of RT #1 [617109, 622439] MFS_MucK Histone_HNS RVT-Retrons FIN Feature: gene Location: 617109-618356 bp Ori: AOJ40153.1 Feature: domain Description: MFS_MucK Location: 617199-618333 bp Feature: domain Description: MFS_MucK Location: 617199-6183 3 3 bp Feature: gene Location: 618651-618980 bp Ori: AOJ40154.1 Feature: domain Description: Histone_HNS Location: 618672-618909 bp Feature: domain Description: Histone_HNS Location: 618672-618909 bp Feature: gene Location: 619308-620657 bp Ori: AOJ40155.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 619773-620409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 619773 -620409 bp Feature: gene Location: 620923-621495 bp Ori: AOJ40156.1 Feature: domain Description: FIN Location: 621100-621457 bp Feature: domain Description: FIN Location: 621100-621457 bp Feature: gene Location: 622167-622439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389)