myRT

myRT report for GCA_001718655.1_ASM171865v1

Download annotations/find similar RTs

Seq: CP013416.1 Burkholderia ubonensis strain MSMB2035 chromosome 2, complete sequence (3000610 bp)
Overview 1 RT 1: 945843-952401 bp 2 RT 2: 2814407-2821377 bp Neighborhood of RT #1 [945843, 952469] OafA HU_like RVT-GII COG3547 RVT-GII GIIM YncA HipB Cupin_2 Neighborhood of RT #2 [2814407, 2821466] couple_hipB HipA_C RVT-GII GIIM COG3547 RVT-GII gram_neg_porins LDcluster4 Feature: gene Location: 945843-946961 bp Ori: AOJ65497.1 Feature: domain Description: OafA Location: 945855-946920 bp Feature: domain Description: OafA Location: 945855-946920 bp Feature: gene Location: 947219-947662 bp Ori: AOJ65498.1 Feature: domain Description: HU_like Location: 947372-947651 bp Feature: domain Description: HU_like Location: 947372-947651 bp Feature: gene Location: 948181-948951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948520-948949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948520-948949 bp Feature: gene Location: 949236-950366 bp Ori: AOJ67122.1 Feature: domain Description: COG3547 Location: 949260-950232 bp Feature: domain Description: COG3547 Location: 949260-950232 bp Feature: gene Location: 950491-951129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950500-950677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950500-950677 bp Feature: domain Description: GIIM Note: maturase Location: 950731-950950 bp Feature: domain Description: GIIM Note: maturase Location: 950731 -950950 bp Feature: gene Location: 951280-951828 bp Ori: AOJ65499.1 Feature: domain Description: YncA Location: 951319-951808 bp Feature: domain Description: YncA Location: 951 31 9-951 808 bp Feature: gene Location: 951828-952469 bp Ori: AOJ65500.1 Feature: domain Description: HipB Location: 951873-952146 bp Feature: domain Description: HipB Location: 951 873-9521 46 bp Feature: domain Description: Cupin_2 Location: 952254-952401 bp Feature: domain Description: Cupin_2 Location: 952254-952401 bp Feature: gene Location: 2814407-2814691 bp Ori: AOJ66894.1 Feature: domain Description: couple_hipB Location: 2814533-2814668 bp Feature: domain Description: couple_hipB Location: 281 4533-281 4668 bp Feature: gene Location: 2814708-2816021 bp Ori: AOJ66895.1 Feature: domain Description: HipA_C Location: 2815209-2815809 bp Feature: domain Description: HipA_C Location: 281 5209-281 5809 bp Feature: gene Location: 2816194-2816832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2816203-2816380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 6203-281 6380 bp Feature: domain Description: GIIM Note: maturase Location: 2816434-2816653 bp Feature: domain Description: GIIM Note: maturase Location: 281 6434-281 6653 bp Feature: gene Location: 2816957-2818087 bp Ori: AOJ67303.1 Feature: domain Description: COG3547 Location: 2816981-2817953 bp Feature: domain Description: COG3547 Location: 281 6981 -281 7953 bp Feature: gene Location: 2818372-2819142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2818711-2819140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 871 1 -281 91 40 bp Feature: gene Location: 2819644-2820843 bp Ori: AOJ66896.1 Feature: domain Description: gram_neg_porins Location: 2819713-2820841 bp Feature: domain Description: gram_neg_porins Location: 281 971 3-2820841 bp Feature: gene Location: 2820912-2821466 bp Ori: AOJ66897.1 Feature: domain Description: LDcluster4 Location: 2821017-2821377 bp Feature: domain Description: LDcluster4 Location: 2821 01 7-2821 377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), HU_like (cd13834), RVT-GII, COG3547 (Transposase ), GIIM (pfam08388), YncA (COG1247), HipB (COG1396), Cupin_2 (pfam07883), couple_hipB (TIGR03070), HipA_C (pfam07804)
gram_neg_porins (cd00342), LDcluster4 (pfam18306)

Seq: CP013414.1 Burkholderia ubonensis strain MSMB2035 chromosome 1, complete sequence (3935154 bp)
Overview 1 RT 1: 159122-173711 bp 2 RT 2: 601615-607414 bp 3 RT 3: 1596597-1603188 bp 4 RT 4: 2065880-2072366 bp 5 RT 5: 2479314-2485649 bp Neighborhood of RT #1 [159122, 173800] putA PBP1_ABC_LIVBP_like RVT-GII GIIM RVT-GII COG3293 DDE_Tnp_1_2 COG3547 RVT-GII GIIM FACL_FadD13-like PRK11561 Neighborhood of RT #2 [601615, 607434] CspC PotE RVT-GII GIIM 45_DOPA_Dioxygenase PRK06029 Neighborhood of RT #3 [1596597, 1603193] 17kDa_Anti_2 Nudix_Hydrolase RVT-GII GIIM COG3547 RVT-GII PRK05347 PRK10540 Neighborhood of RT #4 [2065880, 2072767] AraC VOC RVT-Retrons COG3547 DUF3141 Neighborhood of RT #5 [2479314, 2485654] HTH_1 PBP2_CrgA_like_3 RVT-GII GIIM RVT-GII PRK13395 PRK13257 Feature: gene Location: 159122-163054 bp Ori: AOJ61114.1 Gene: putA Feature: domain Description: putA Location: 159125-163052 bp Feature: domain Description: putA Location: 15912 5-163052 bp Feature: gene Location: 163140-164279 bp Ori: AOJ61115.1 Feature: domain Description: PBP1_ABC_LIVBP_like Location: 163227-164235 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 1632 2 7-1642 35 bp Feature: gene Location: 164798-166204 bp Ori: AOJ61116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165137-165752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165137-165752 bp Feature: domain Description: GIIM Note: maturase Location: 165806-166025 bp Feature: domain Description: GIIM Note: maturase Location: 165806-16602 5 bp Feature: gene Location: 166704-167360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167043-167361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167043-167361 bp Feature: gene Location: 167401-168207 bp Ori: AOJ61117.1 Feature: domain Description: COG3293 Location: 167422-167812 bp Feature: domain Description: COG32 93 Location: 16742 2 -167812 bp Feature: domain Description: DDE_Tnp_1_2 Location: 167941-168175 bp Feature: domain Description: DDE_Tnp_1_2 Location: 167941-168175 bp Feature: gene Location: 168618-169748 bp Ori: AOJ64234.1 Feature: domain Description: COG3547 Location: 168642-169614 bp Feature: domain Description: COG3547 Location: 168642 -169614 bp Feature: gene Location: 169873-170511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169882-170059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169882 -170059 bp Feature: domain Description: GIIM Note: maturase Location: 170113-170332 bp Feature: domain Description: GIIM Note: maturase Location: 170113-170332 bp Feature: gene Location: 170599-172107 bp Ori: AOJ61118.1 Feature: domain Description: FACL_FadD13-like Location: 170620-172081 bp Feature: domain Description: FACL_FadD13-like Location: 17062 0-172 081 bp Feature: gene Location: 172148-173800 bp Ori: AOJ61119.1 Feature: domain Description: PRK11561 Location: 172160-173711 bp Feature: domain Description: PRK11561 Location: 172 160-173711 bp Feature: gene Location: 601615-601818 bp Ori: AOJ61465.1 Feature: domain Description: CspC Location: 601618-601813 bp Feature: domain Description: CspC Location: 601618-601813 bp Feature: gene Location: 602240-603838 bp Ori: AOJ61466.1 Feature: domain Description: PotE Location: 602255-603731 bp Feature: domain Description: PotE Location: 602 2 55-603731 bp Feature: gene Location: 604354-605760 bp Ori: AOJ61467.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604693-605308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604693-605308 bp Feature: domain Description: GIIM Note: maturase Location: 605362-605581 bp Feature: domain Description: GIIM Note: maturase Location: 605362 -605581 bp Feature: gene Location: 605844-606635 bp Ori: AOJ61468.1 Feature: domain Description: 45_DOPA_Dioxygenase Location: 605859-606618 bp Feature: domain Description: 45_DOPA_Dioxygenase Location: 605859-606618 bp Feature: gene Location: 606838-607434 bp Ori: AOJ61469.1 Feature: domain Description: PRK06029 Location: 606865-607414 bp Feature: domain Description: PRK0602 9 Location: 606865-607414 bp Feature: gene Location: 1596597-1596983 bp Ori: AOJ62269.1 Feature: domain Description: 17kDa_Anti_2 Location: 1596720-1596975 bp Feature: domain Description: 17kDa_Anti_2 Location: 159672 0-1596975 bp Feature: gene Location: 1596995-1597465 bp Ori: AOJ62270.1 Feature: domain Description: Nudix_Hydrolase Location: 1597025-1597385 bp Feature: domain Description: Nudix_Hydrolase Location: 159702 5-1597385 bp Feature: gene Location: 1597550-1598188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1597559-1597736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1597559-1597736 bp Feature: domain Description: GIIM Note: maturase Location: 1597790-1598009 bp Feature: domain Description: GIIM Note: maturase Location: 1597790-1598009 bp Feature: gene Location: 1598313-1599443 bp Ori: AOJ64350.1 Feature: domain Description: COG3547 Location: 1598337-1599309 bp Feature: domain Description: COG3547 Location: 1598337-1599309 bp Feature: gene Location: 1599728-1600498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1600067-1600496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1600067-1600496 bp Feature: gene Location: 1601009-1602718 bp Ori: AOJ62271.1 Feature: domain Description: PRK05347 Location: 1601027-1602710 bp Feature: domain Description: PRK05347 Location: 160102 7-1602 710 bp Feature: gene Location: 1602984-1603193 bp Ori: AOJ62272.1 Feature: domain Description: PRK10540 Location: 1603020-1603188 bp Feature: domain Description: PRK10540 Location: 160302 0-1603188 bp Feature: gene Location: 2065880-2066707 bp Ori: AOJ62659.1 Feature: domain Description: AraC Location: 2066342-2066696 bp Feature: domain Description: AraC Location: 2 066342 -2 066696 bp Feature: gene Location: 2067146-2067532 bp Ori: AOJ62660.1 Feature: domain Description: VOC Location: 2067161-2067482 bp Feature: domain Description: VOC Location: 2 067161-2 067482 bp Feature: gene Location: 2067828-2069177 bp Ori: AOJ62661.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2068293-2068929 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 0682 93-2 06892 9 bp Feature: gene Location: 2069490-2070620 bp Ori: AOJ64384.1 Feature: domain Description: COG3547 Location: 2069514-2070486 bp Feature: domain Description: COG3547 Location: 2 069514-2 070486 bp Feature: gene Location: 2071379-2072767 bp Ori: AOJ62662.1 Feature: domain Description: DUF3141 Location: 2071412-2072366 bp Feature: domain Description: DUF3141 Location: 2 071412 -2 072 366 bp Feature: gene Location: 2479314-2479553 bp Feature: gene Location: 2479644-2480600 bp Ori: AOJ63010.1 Feature: domain Description: HTH_1 Location: 2479659-2479830 bp Feature: domain Description: HTH_1 Location: 2 479659-2 479830 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 2479920-2480529 bp Feature: domain Description: PBP2 _CrgA_like_3 Location: 2 47992 0-2 48052 9 bp Feature: gene Location: 2480692-2481330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2480701-2480878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 480701-2 480878 bp Feature: domain Description: GIIM Note: maturase Location: 2480932-2481151 bp Feature: domain Description: GIIM Note: maturase Location: 2 480932 -2 481151 bp Feature: gene Location: 2482870-2483640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2483209-2483638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4832 09-2 483638 bp Feature: gene Location: 2484132-2484644 bp Ori: AOJ63011.1 Feature: domain Description: PRK13395 Location: 2484135-2484627 bp Feature: domain Description: PRK13395 Location: 2 484135-2 48462 7 bp Feature: gene Location: 2484641-2485654 bp Ori: AOJ63012.1 Feature: domain Description: PRK13257 Location: 2484659-2485649 bp Feature: domain Description: PRK132 57 Location: 2 484659-2 485649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT putA (PRK11809), PBP1_ABC_LIVBP_like, RVT-GII, GIIM (pfam08388), COG3293 (Transposase ), DDE_Tnp_1_2 (pfam13586), COG3547 (Transposase ), FACL_FadD13-like (cd17631), PRK11561 (isovaleryl CoA dehydrogenase; Provisional), CspC (COG1278)
PotE (COG0531), 45_DOPA_Dioxygenase (cd07363), PRK06029 (UbiX family flavin prenyltransferase), 17kDa_Anti_2 (pfam16998), Nudix_Hydrolase (cl00447), PRK05347 (glutaminyl-tRNA synthetase; Provisional), PRK10540 (osmotically-inducible lipoprotein OsmB), AraC (COG2207), VOC (cl14632), RVT-Retrons
DUF3141 (pfam11339), HTH_1 (pfam00126), PBP2_CrgA_like_3 (cd08472), PRK13395 (ureidoglycolate lyase), PRK13257 (allantoicase; Provisional)