myRT

myRT report for GCA_001718855.1_ASM171885v1

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Seq: CP013447.1 Burkholderia ubonensis strain MSMB1189WGS chromosome 2, complete sequence (3435939 bp)
Overview 1 RT 1: 2154333-2160213 bp Neighborhood of RT #1 [2154333, 2160356] RVT-GII REC CheX Feature: gene Location: 2154333-2156987 bp Feature: gene Location: 2157050-2157433 bp Feature: gene Location: 2157683-2158933 bp Ori: AOK26730.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2157698-2157956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 57698-21 57956 bp Feature: gene Location: 2158989-2159354 bp Ori: AOK26731.1 Feature: domain Description: REC Location: 2159004-2159346 bp Feature: domain Description: REC Location: 21 59004-21 59346 bp Feature: gene Location: 2159397-2160356 bp Ori: AOK26732.1 Feature: domain Description: CheX Location: 2159913-2160213 bp Feature: domain Description: CheX Location: 21 5991 3-21 6021 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, REC (smart00448), CheX (pfam13690)

Seq: CP013446.1 Burkholderia ubonensis strain MSMB1189WGS chromosome 1, complete sequence (3756926 bp)
Overview 1 RT 1: 1584846-1591627 bp 2 RT 2: 1886997-1892997 bp 3 RT 3: 2101617-2108053 bp 4 RT 4: 3250815-3256142 bp Neighborhood of RT #1 [1584846, 1591627] OafA NlpB RVT-GII GIIM Neighborhood of RT #2 [1886997, 1892997] AraC VOC RVT-Retrons DUF3141 Neighborhood of RT #3 [2101617, 2108058] YlaK Spr RVT-GII GIIM PHO4 YkaA Neighborhood of RT #4 [3250815, 3256216] RpiR PLPDE_III_cryptic_DSD RVT-GII GIIM GATase1_PfpI_1 MarR Feature: gene Location: 1584846-1586726 bp Ori: AOK23167.1 Feature: domain Description: OafA Location: 1584852-1585833 bp Feature: domain Description: OafA Location: 1584852 -1585833 bp Feature: gene Location: 1587041-1588252 bp Ori: AOK23168.1 Feature: domain Description: NlpB Location: 1587089-1588250 bp Feature: domain Description: NlpB Location: 1587089-15882 50 bp Feature: gene Location: 1588725-1590089 bp Ori: AOK23169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589058-1589673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589058-1589673 bp Feature: domain Description: GIIM Note: maturase Location: 1589730-1589946 bp Feature: domain Description: GIIM Note: maturase Location: 1589730-1589946 bp Feature: gene Location: 1590962-1591219 bp Feature: gene Location: 1591358-1591627 bp Feature: gene Location: 1886997-1887824 bp Ori: AOK23401.1 Feature: domain Description: AraC Location: 1887459-1887813 bp Feature: domain Description: AraC Location: 1887459-1887813 bp Feature: gene Location: 1888263-1888649 bp Ori: AOK23402.1 Feature: domain Description: VOC Location: 1888278-1888599 bp Feature: domain Description: VOC Location: 18882 78-1888599 bp Feature: gene Location: 1888952-1890301 bp Ori: AOK23403.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1889417-1890053 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1889417-1890053 bp Feature: gene Location: 1890550-1892808 bp Ori: AOK23404.1 Feature: domain Description: DUF3141 Location: 1890676-1892407 bp Feature: domain Description: DUF3141 Location: 1890676-1892 407 bp Feature: gene Location: 1892818-1892997 bp Feature: gene Location: 2101617-2103413 bp Ori: AOK23570.1 Feature: domain Description: YlaK Location: 2102025-2103411 bp Feature: domain Description: YlaK Location: 2 102 02 5-2 103411 bp Feature: gene Location: 2103654-2104712 bp Ori: AOK23571.1 Feature: domain Description: Spr Location: 2103828-2104173 bp Feature: domain Description: Spr Location: 2 10382 8-2 104173 bp Feature: gene Location: 2104950-2106209 bp Ori: AOK23572.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105142-2105757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 105142 -2 105757 bp Feature: domain Description: GIIM Note: maturase Location: 2105811-2106030 bp Feature: domain Description: GIIM Note: maturase Location: 2 105811-2 106030 bp Feature: gene Location: 2106411-2107421 bp Ori: AOK23573.1 Feature: domain Description: PHO4 Location: 2106486-2107386 bp Feature: domain Description: PHO4 Location: 2 106486-2 107386 bp Feature: gene Location: 2107432-2108058 bp Ori: AOK23574.1 Feature: domain Description: YkaA Location: 2107438-2108053 bp Feature: domain Description: YkaA Location: 2 107438-2 108053 bp Feature: gene Location: 3250815-3251744 bp Ori: AOK24480.1 Feature: domain Description: RpiR Location: 3250887-3251712 bp Feature: domain Description: RpiR Location: 32 50887-32 51712 bp Feature: gene Location: 3251864-3253144 bp Ori: AOK24481.1 Feature: domain Description: PLPDE_III_cryptic_DSD Location: 3251993-3253136 bp Feature: domain Description: PLPDE_III_cryptic_DSD Location: 32 51993-32 53136 bp Feature: gene Location: 3253243-3254607 bp Ori: AOK24482.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3253576-3254191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 53576-32 54191 bp Feature: domain Description: GIIM Note: maturase Location: 3254248-3254461 bp Feature: domain Description: GIIM Note: maturase Location: 32 542 48-32 54461 bp Feature: gene Location: 3255143-3255724 bp Ori: AOK24483.1 Feature: domain Description: GATase1_PfpI_1 Location: 3255158-3255704 bp Feature: domain Description: GATase1_PfpI_1 Location: 32 55158-32 55704 bp Feature: gene Location: 3255770-3256216 bp Ori: AOK24484.1 Feature: domain Description: MarR Location: 3255815-3256142 bp Feature: domain Description: MarR Location: 32 55815-32 56142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), NlpB (COG3317), RVT-GII, GIIM (pfam08388), AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339), YlaK (COG1875), Spr (COG0791)
PHO4 (pfam01384), YkaA (COG1392), RpiR (COG1737), PLPDE_III_cryptic_DSD (cd06818), GATase1_PfpI_1 (cd03169), MarR (pfam01047)