myRT

myRT report for GCA_001718955.1_ASM171895v1

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Seq: CP013459.1 Burkholderia stagnalis strain MSMB735WGS chromosome 1, complete sequence (3703595 bp)
Overview 1 RT 1: 1084704-1091605 bp 2 RT 2: 1784715-1792433 bp 3 RT 3: 2043068-2050676 bp 4 RT 4: 2150583-2158953 bp 5 RT 5: 2697228-2704049 bp Neighborhood of RT #1 [1084704, 1091607] rpoZ SpoT RVT-GII GIIM greB gram_neg_porins Neighborhood of RT #2 [1784715, 1792477] E_set_Chitinase_N ChiA PKD PKD PRK13211 PRK13211 PRK13211 RVT-GII GIIM typeII_sec_gspG PRK15328 Neighborhood of RT #3 [2043068, 2050759] PRK09939 YneE RVT-GII GIIM AppB AppC Neighborhood of RT #4 [2150583, 2158958] Tex Kup RVT-GII GIIM Hpt1 PRK01117 Neighborhood of RT #5 [2697228, 2704057] SUL1 PRK00915 RVT-GII GIIM PssA PRK05305 Feature: gene Location: 1084704-1084907 bp Ori: AOK52109.1 Feature: domain Description: rpoZ Location: 1084707-1084896 bp Feature: domain Description: rpoZ Location: 1 084707-1 084896 bp Feature: gene Location: 1084972-1087341 bp Ori: AOK54290.1 Feature: domain Description: SpoT Location: 1085128-1087264 bp Feature: domain Description: SpoT Location: 1 0851 28-1 087264 bp Feature: gene Location: 1087777-1089147 bp Ori: AOK52110.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088113-1088728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0881 1 3-1 088728 bp Feature: domain Description: GIIM Note: maturase Location: 1088782-1088989 bp Feature: domain Description: GIIM Note: maturase Location: 1 088782-1 088989 bp Feature: gene Location: 1089814-1090377 bp Ori: AOK54291.1 Feature: domain Description: greB Location: 1089892-1090357 bp Feature: domain Description: greB Location: 1 089892-1 090357 bp Feature: gene Location: 1090465-1091607 bp Ori: AOK52111.1 Feature: domain Description: gram_neg_porins Location: 1090531-1091605 bp Feature: domain Description: gram_neg_porins Location: 1 090531 -1 091 605 bp Feature: gene Location: 1784715-1787654 bp Ori: AOK52631.1 Feature: domain Description: E_set_Chitinase_N Location: 1784856-1785192 bp Feature: domain Description: E_set_Chitinase_N Location: 1 784856-1 7851 92 bp Feature: domain Description: ChiA Location: 1785249-1786506 bp Feature: domain Description: ChiA Location: 1 785249-1 786506 bp Feature: domain Description: PKD Location: 1786554-1786812 bp Feature: domain Description: PKD Location: 1 786554-1 78681 2 bp Feature: domain Description: PKD Location: 1786884-1787118 bp Feature: domain Description: PKD Location: 1 786884-1 7871 1 8 bp Feature: domain Description: PRK13211 Location: 1787166-1787340 bp Feature: domain Description: PRK1 321 1 Location: 1 7871 66-1 787340 bp Feature: domain Description: PRK13211 Location: 1787481-1787646 bp Feature: domain Description: PRK1 321 1 Location: 1 787481 -1 787646 bp Feature: gene Location: 1787972-1789432 bp Ori: AOK52632.1 Feature: domain Description: PRK13211 Location: 1788011-1789352 bp Feature: domain Description: PRK1 321 1 Location: 1 78801 1 -1 789352 bp Feature: gene Location: 1789869-1791239 bp Ori: AOK52633.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790205-1790820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 790205-1 790820 bp Feature: domain Description: GIIM Note: maturase Location: 1790874-1791081 bp Feature: domain Description: GIIM Note: maturase Location: 1 790874-1 791 081 bp Feature: gene Location: 1791550-1791990 bp Ori: AOK52634.1 Feature: domain Description: typeII_sec_gspG Location: 1791595-1791979 bp Feature: domain Description: typeII_sec_gspG Location: 1 791 595-1 791 979 bp Feature: gene Location: 1791965-1792477 bp Ori: AOK52635.1 Feature: domain Description: PRK15328 Location: 1792037-1792433 bp Feature: domain Description: PRK1 5328 Location: 1 792037-1 792433 bp Feature: gene Location: 2043068-2045347 bp Ori: AOK52807.1 Feature: domain Description: PRK09939 Location: 2043098-2045336 bp Feature: domain Description: PRK09939 Location: 2043098-2045336 bp Feature: gene Location: 2045452-2046375 bp Ori: AOK52808.1 Feature: domain Description: YneE Location: 2045455-2046373 bp Feature: domain Description: YneE Location: 2045455-2046373 bp Feature: gene Location: 2046514-2047884 bp Ori: AOK52809.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2046850-2047465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2046850-2047465 bp Feature: domain Description: GIIM Note: maturase Location: 2047519-2047726 bp Feature: domain Description: GIIM Note: maturase Location: 204751 9-2047726 bp Feature: gene Location: 2048341-2049348 bp Ori: AOK52810.1 Feature: domain Description: AppB Location: 2048350-2049343 bp Feature: domain Description: AppB Location: 2048350-2049343 bp Feature: gene Location: 2049359-2050759 bp Ori: AOK52811.1 Feature: domain Description: AppC Location: 2049371-2050676 bp Feature: domain Description: AppC Location: 2049371 -2050676 bp Feature: gene Location: 2150583-2152910 bp Ori: AOK52889.1 Feature: domain Description: Tex Location: 2150592-2152905 bp Feature: domain Description: Tex Location: 21 50592-21 52905 bp Feature: gene Location: 2153000-2154919 bp Ori: AOK52890.1 Feature: domain Description: Kup Location: 2153048-2154917 bp Feature: domain Description: Kup Location: 21 53048-21 5491 7 bp Feature: gene Location: 2155207-2156577 bp Ori: AOK52891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2155543-2156158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 55543-21 561 58 bp Feature: domain Description: GIIM Note: maturase Location: 2156212-2156419 bp Feature: domain Description: GIIM Note: maturase Location: 21 5621 2-21 5641 9 bp Feature: gene Location: 2157015-2157605 bp Ori: AOK52892.1 Feature: domain Description: Hpt1 Location: 2157072-2157573 bp Feature: domain Description: Hpt1 Location: 21 57072-21 57573 bp Feature: gene Location: 2157612-2158958 bp Ori: AOK52893.1 Feature: domain Description: PRK01117 Location: 2157648-2158953 bp Feature: domain Description: PRK01 1 1 7 Location: 21 57648-21 58953 bp Feature: gene Location: 2697228-2698778 bp Ori: AOK53337.1 Feature: domain Description: SUL1 Location: 2697252-2698713 bp Feature: domain Description: SUL1 Location: 2697252-269871 3 bp Feature: gene Location: 2698845-2700389 bp Ori: AOK53338.1 Feature: domain Description: PRK00915 Location: 2698848-2700378 bp Feature: domain Description: PRK0091 5 Location: 2698848-2700378 bp Feature: gene Location: 2700734-2702104 bp Ori: AOK53339.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701070-2701685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701 070-2701 685 bp Feature: domain Description: GIIM Note: maturase Location: 2701739-2701946 bp Feature: domain Description: GIIM Note: maturase Location: 2701 739-2701 946 bp Feature: gene Location: 2702531-2703397 bp Ori: AOK53340.1 Feature: domain Description: PssA Location: 2702660-2703341 bp Feature: domain Description: PssA Location: 2702660-2703341 bp Feature: gene Location: 2703413-2704057 bp Ori: AOK53341.1 Feature: domain Description: PRK05305 Location: 2703437-2704049 bp Feature: domain Description: PRK05305 Location: 2703437-2704049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoZ (TIGR00690), SpoT (COG0317), RVT-GII, GIIM (pfam08388), greB (TIGR01461), gram_neg_porins (cd00342), E_set_Chitinase_N (cd02848), ChiA (COG3325), PKD (smart00089), PRK13211 (N-acetylglucosamine-binding protein GbpA)
typeII_sec_gspG (TIGR01710), PRK15328 (type III secretion system invasion protein IagB), PRK09939 (acid resistance putative oxidoreductase YdeP), YneE (COG3781), AppB (COG1294), AppC (COG1271), Tex (COG2183), Kup (COG3158), Hpt1 (COG2236), PRK01117 (adenylosuccinate synthetase; Provisional)
SUL1 (COG0659), PRK00915 (2-isopropylmalate synthase; Validated), PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein)