myRT

myRT report for GCA_001721065.1_ASM172106v1

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Seq: CP012460.1 Enterococcus faecium strain ISMMS_VRE_7, complete genome (2850245 bp)
Overview 1 RT 1: 1913221-1920052 bp 2 RT 2: 2063275-2068509 bp 3 RT 3: 2071570-2081513 bp 4 RT 4: 2426784-2431385 bp 5 RT 5: 2489493-2494675 bp 6 RT 6: 2498185-2510131 bp Neighborhood of RT #1 [1913221, 1920060] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Neighborhood of RT #2 [2063275, 2069336] Lysozyme_like Spr RVT-GII Neighborhood of RT #3 [2071570, 2081581] TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc DUF961 Neighborhood of RT #4 [2426784, 2431393] HTH_XRE DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #5 [2489493, 2495502] Lysozyme_like Spr RVT-GII Neighborhood of RT #6 [2498185, 2510139] ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc RelB_DinJ Feature: gene Location: 1913221-1914477 bp Ori: AOM31610.1 Feature: domain Description: PRK13354 Location: 1913224-1914469 bp Feature: domain Description: PRK1 3354 Location: 1 91 3224-1 91 4469 bp Feature: gene Location: 1915057-1916358 bp Ori: AOM31611.1 Feature: domain Description: CE4_DAC_u3_5s Location: 1915726-1916116 bp Feature: domain Description: CE4_DAC_u3_5s Location: 1 91 5726-1 91 61 1 6 bp Feature: gene Location: 1916451-1917839 bp Ori: AOM31612.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1916772-1917387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 6772-1 91 7387 bp Feature: domain Description: GIIM Note: maturase Location: 1917444-1917660 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 7444-1 91 7660 bp Feature: gene Location: 1918326-1918925 bp Ori: AOM31613.1 Feature: domain Description: AcrR Location: 1918344-1918830 bp Feature: domain Description: AcrR Location: 1 91 8344-1 91 8830 bp Feature: gene Location: 1919179-1920060 bp Ori: AOM31614.1 Feature: domain Description: CcmA Location: 1919182-1920052 bp Feature: domain Description: CcmA Location: 1 91 91 82-1 920052 bp Feature: gene Location: 2063275-2064276 bp Ori: AOM31737.1 Feature: domain Description: Lysozyme_like Location: 2063419-2063878 bp Feature: domain Description: Lysozyme_like Location: 206341 9-2063878 bp Feature: domain Description: Spr Location: 2063905-2064259 bp Feature: domain Description: Spr Location: 2063905-2064259 bp Feature: gene Location: 2064273-2066456 bp Feature: gene Location: 2067510-2069336 bp Ori: AOM31739.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2067810-2068509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206781 0-2068509 bp Feature: gene Location: 2071570-2071962 bp Ori: AOM31740.1 Feature: domain Description: TcpE Location: 2071588-2071888 bp Feature: domain Description: TcpE Location: 2071 588-2071 888 bp Feature: gene Location: 2072049-2072546 bp Ori: AOM31741.1 Feature: domain Description: ArdA Location: 2072067-2072532 bp Feature: domain Description: ArdA Location: 2072067-2072532 bp Feature: gene Location: 2072991-2074901 bp Ori: AOM31742.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073324-2074062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073324-2074062 bp Feature: domain Description: HNHc Note: nucleases Location: 2074617-2074782 bp Feature: domain Description: HNHc Note: nucleases Location: 207461 7-2074782 bp Feature: gene Location: 2075685-2076890 bp Ori: AOM31743.1 Feature: domain Description: HTH_XRE Location: 2075730-2075874 bp Feature: domain Description: HTH_XRE Location: 2075730-2075874 bp Feature: domain Description: Rol_Rep_N Location: 2075901-2076168 bp Feature: domain Description: Rol_Rep_N Location: 2075901 -20761 68 bp Feature: domain Description: Rep_trans Location: 2076192-2076801 bp Feature: domain Description: Rep_trans Location: 20761 92-2076801 bp Feature: gene Location: 2077069-2077353 bp Feature: gene Location: 2077447-2079306 bp Ori: AOM31745.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2077756-2078497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2077756-2078497 bp Feature: domain Description: HNHc Note: nucleases Location: 2079052-2079190 bp Feature: domain Description: HNHc Note: nucleases Location: 2079052-20791 90 bp Feature: gene Location: 2079425-2079655 bp Feature: gene Location: 2081195-2081581 bp Ori: AOM31747.1 Feature: domain Description: DUF961 Location: 2081213-2081513 bp Feature: domain Description: DUF961 Location: 2081 21 3-2081 51 3 bp Feature: gene Location: 2426784-2427029 bp Ori: AOM32057.1 Feature: domain Description: HTH_XRE Location: 2426835-2427021 bp Feature: domain Description: HTH_XRE Location: 2426835-2427021 bp Feature: gene Location: 2427405-2427884 bp Ori: AOM32058.1 Feature: domain Description: DUF3841 Location: 2427414-2427789 bp Feature: domain Description: DUF3841 Location: 242741 4-2427789 bp Feature: gene Location: 2428062-2429558 bp Ori: AOM32483.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2428470-2428926 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2428470-2428926 bp Feature: gene Location: 2429704-2430018 bp Ori: AOM32059.1 Feature: domain Description: AlbA_2 Location: 2429743-2429914 bp Feature: domain Description: AlbA_2 Location: 2429743-242991 4 bp Feature: gene Location: 2430134-2431393 bp Ori: AOM32060.1 Feature: domain Description: PRK09290 Location: 2430140-2431385 bp Feature: domain Description: PRK09290 Location: 24301 40-2431 385 bp Feature: gene Location: 2489493-2490497 bp Ori: AOM32110.1 Feature: domain Description: Lysozyme_like Location: 2489640-2490102 bp Feature: domain Description: Lysozyme_like Location: 2489640-24901 02 bp Feature: domain Description: Spr Location: 2490129-2490483 bp Feature: domain Description: Spr Location: 24901 29-2490483 bp Feature: gene Location: 2490494-2492617 bp Feature: gene Location: 2493676-2495502 bp Ori: AOM32112.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493976-2494675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493976-2494675 bp Feature: gene Location: 2498185-2498688 bp Ori: AOM32114.1 Feature: domain Description: ArdA Location: 2498203-2498674 bp Feature: domain Description: ArdA Location: 2498203-2498674 bp Feature: gene Location: 2498701-2498925 bp Feature: gene Location: 2499029-2500939 bp Ori: AOM32116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499362-2500100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499362-25001 00 bp Feature: domain Description: HNHc Note: nucleases Location: 2500655-2500820 bp Feature: domain Description: HNHc Note: nucleases Location: 2500655-2500820 bp Feature: gene Location: 2501685-2501804 bp Ori: AOM32117.1 Feature: domain Description: DUF3789 Location: 2501694-2501787 bp Feature: domain Description: DUF3789 Location: 2501 694-2501 787 bp Feature: gene Location: 2501819-2503003 bp Ori: AOM32118.1 Feature: domain Description: HTH_XRE Location: 2501849-2501993 bp Feature: domain Description: HTH_XRE Location: 2501 849-2501 993 bp Feature: domain Description: Rol_Rep_N Location: 2502026-2502290 bp Feature: domain Description: Rol_Rep_N Location: 2502026-2502290 bp Feature: domain Description: Rep_trans Location: 2502314-2502926 bp Feature: domain Description: Rep_trans Location: 250231 4-2502926 bp Feature: gene Location: 2504917-2505591 bp Ori: AOM32122.1 Feature: domain Description: Zeta_toxin Location: 2505016-2505499 bp Feature: domain Description: Zeta_toxin Location: 250501 6-2505499 bp Feature: gene Location: 2505669-2505908 bp Feature: gene Location: 2506002-2507861 bp Ori: AOM32124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2506311-2507052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250631 1 -2507052 bp Feature: domain Description: HNHc Note: nucleases Location: 2507607-2507745 bp Feature: domain Description: HNHc Note: nucleases Location: 2507607-2507745 bp Feature: gene Location: 2507980-2508210 bp Feature: gene Location: 2509804-2510139 bp Ori: AOM32126.1 Feature: domain Description: RelB_DinJ Location: 2510008-2510131 bp Feature: domain Description: RelB_DinJ Location: 251 0008-251 01 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), RVT-GII, GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133), Lysozyme_like (pfam13702), Spr (COG0791), TcpE (pfam12648), ArdA (pfam07275)
HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF961 (pfam06125), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), DUF3789 (pfam12664)
Zeta_toxin (pfam06414), RelB_DinJ (TIGR02384)

Seq: CP012462.1 Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p2 sequence (77567 bp)
Overview 1 RT 1: 1019-5817 bp 2 RT 2: 33627-38537 bp Neighborhood of RT #1 [1019, 5817] RVT-GII Neighborhood of RT #2 [33627, 38537] Phage_lysozyme2 PHA01817 RVT-GII GIIM Feature: gene Location: 1019-2872 bp Ori: AOM32703.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1328-2066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 8-2 066 bp Feature: gene Location: 4379-4666 bp Feature: gene Location: 4699-5817 bp Feature: gene Location: 33627-34964 bp Ori: AOM32783.1 Feature: domain Description: Phage_lysozyme2 Location: 33813-34278 bp Feature: domain Description: Phage_lysozyme2 Location: 33813-342 78 bp Feature: domain Description: PHA01817 Location: 34404-34935 bp Feature: domain Description: PHA01817 Location: 34404-34935 bp Feature: gene Location: 35084-35563 bp Feature: gene Location: 36023-37411 bp Ori: AOM32738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36344-36959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36344-36959 bp Feature: domain Description: GIIM Note: maturase Location: 37016-37232 bp Feature: domain Description: GIIM Note: maturase Location: 37016-372 32 bp Feature: gene Location: 37815-38132 bp Feature: gene Location: 38250-38537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_lysozyme2 (pfam18013), PHA01817 (hypothetical protein), GIIM (pfam08388)

Seq: CP012464.1 Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p4, complete sequence (38586 bp)
Overview 1 RT 1: 4301-11740 bp Neighborhood of RT #1 [4301, 11745] COG3464 Rve RVT-AbiP2 Tra8 PinE Feature: gene Location: 4301-5560 bp Ori: AOM32850.1 Feature: domain Description: COG3464 Location: 4436-5537 bp Feature: domain Description: COG3 464 Location: 443 6-553 7 bp Feature: gene Location: 5614-6294 bp Ori: AOM32851.1 Feature: domain Description: Rve Location: 5617-6265 bp Feature: domain Description: Rve Location: 5617-6265 bp Feature: gene Location: 8133-9521 bp Ori: AOM32883.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 8394-8859 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 83 94-8859 bp Feature: gene Location: 9586-10539 bp Ori: AOM32852.1 Feature: domain Description: Tra8 Location: 9589-10516 bp Feature: domain Description: Tra8 Location: 9589-10516 bp Feature: gene Location: 11182-11745 bp Ori: AOM32853.1 Feature: domain Description: PinE Location: 11194-11740 bp Feature: domain Description: PinE Location: 11194-11740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), Rve (COG3316), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)