myRT

myRT report for GCA_001721205.1_ASM172120v1

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Seq: CP014670.1 Escherichia coli strain CFSAN004177, complete genome (5191331 bp)
Overview 1 RT 1: 1020805-1024302 bp 2 RT 2: 1554391-1558496 bp Neighborhood of RT #1 [1020805, 1024302] PRK13889 RVT-Retrons HTH_XRE Neighborhood of RT #2 [1554391, 1558496] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 1020805-1020969 bp Feature: gene Location: 1021043-1022545 bp Ori: AOM62792.1 Feature: domain Description: PRK13889 Location: 1021049-1021634 bp Feature: domain Description: PRK1 3889 Location: 1 021 049-1 021 634 bp Feature: gene Location: 1022622-1023722 bp Ori: AOM59081.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1022763-1023318 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 022763-1 02331 8 bp Feature: gene Location: 1023715-1023996 bp Ori: AOM59082.1 Feature: domain Description: HTH_XRE Location: 1023730-1023895 bp Feature: domain Description: HTH_XRE Location: 1 023730-1 023895 bp Feature: gene Location: 1024087-1024302 bp Feature: gene Location: 1554391-1554801 bp Feature: gene Location: 1555021-1555401 bp Feature: domain Description: DUF932 Location: 1555132-1555402 bp Feature: domain Description: DUF932 Location: 1 5551 32-1 555402 bp Feature: gene Location: 1555992-1557692 bp Ori: AOM62819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556175-1556970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5561 75-1 556970 bp Feature: domain Description: Intron_maturas2 Location: 1557096-1557321 bp Feature: domain Description: Intron_maturas2 Location: 1 557096-1 557321 bp Feature: domain Description: HNHc Note: nucleases Location: 1557516-1557666 bp Feature: domain Description: HNHc Note: nucleases Location: 1 55751 6-1 557666 bp Feature: gene Location: 1557814-1558251 bp Feature: domain Description: DUF932 Location: 1557826-1558216 bp Feature: domain Description: DUF932 Location: 1 557826-1 55821 6 bp Feature: gene Location: 1558251-1558496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530), DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)