myRT

myRT report for GCA_001721225.1_ASM172122v1

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Seq: CP014583.1 Escherichia coli strain CFSAN004176, complete genome (5193734 bp)
Overview 1 RT 1: 3630929-3635034 bp 2 RT 2: 4163896-4167393 bp Neighborhood of RT #1 [3630929, 3635034] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Neighborhood of RT #2 [4163896, 4167393] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 3630929-3631174 bp Feature: gene Location: 3631174-3631611 bp Feature: domain Description: DUF932 Location: 3631186-3631576 bp Feature: domain Description: DUF932 Location: 3631 1 86-3631 576 bp Feature: gene Location: 3631733-3633433 bp Ori: AOM57904.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631916-3632711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631 91 6-363271 1 bp Feature: domain Description: Intron_maturas2 Location: 3632837-3633062 bp Feature: domain Description: Intron_maturas2 Location: 3632837-3633062 bp Feature: domain Description: HNHc Note: nucleases Location: 3633257-3633407 bp Feature: domain Description: HNHc Note: nucleases Location: 3633257-3633407 bp Feature: gene Location: 3634024-3634404 bp Feature: domain Description: DUF932 Location: 3634135-3634405 bp Feature: domain Description: DUF932 Location: 36341 35-3634405 bp Feature: gene Location: 3634624-3635034 bp Feature: gene Location: 4163896-4164111 bp Feature: gene Location: 4164202-4164483 bp Ori: AOM56817.1 Feature: domain Description: HTH_XRE Location: 4164217-4164382 bp Feature: domain Description: HTH_XRE Location: 41 6421 7-41 64382 bp Feature: gene Location: 4164476-4165576 bp Ori: AOM56818.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4164617-4165172 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 6461 7-41 651 72 bp Feature: gene Location: 4165653-4167155 bp Ori: AOM57929.1 Feature: domain Description: PRK13889 Location: 4165659-4166244 bp Feature: domain Description: PRK1 3889 Location: 41 65659-41 66244 bp Feature: gene Location: 4167229-4167393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)