myRT

myRT report for GCA_001721525.1_ASM172152v1

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Seq: CP015834.1 Escherichia coli strain MS6198, complete genome (5176750 bp)
Overview 1 RT 1: 2247038-2252901 bp 2 RT 2: 3369911-3375314 bp 3 RT 3: 4171746-4175628 bp Neighborhood of RT #1 [2247038, 2252915] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [3369911, 3375322] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Neighborhood of RT #3 [4171746, 4175633] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 2247038-2248294 bp Ori: AOM70394.1 Gene: pepT_2 Feature: domain Description: PRK13381 Location: 2247044-2248259 bp Feature: domain Description: PRK1 3381 Location: 2247044-2248259 bp Feature: gene Location: 2248291-2249652 bp Ori: AOM70395.1 Gene: dcuD_3 Feature: domain Description: DcuC Location: 2248294-2249626 bp Feature: domain Description: DcuC Location: 2248294-2249626 bp Feature: gene Location: 2250298-2250744 bp Ori: AOM70396.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2250604-2250706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2250604-2250706 bp Feature: gene Location: 2251268-2252299 bp Ori: AOM70397.1 Gene: iaaA_2 Feature: domain Description: Asparaginase_2 Location: 2251358-2252291 bp Feature: domain Description: Asparaginase_2 Location: 2251 358-2252291 bp Feature: gene Location: 2252637-2252915 bp Ori: AOM70398.1 Feature: domain Description: DUF5339 Location: 2252700-2252901 bp Feature: domain Description: DUF5339 Location: 2252700-2252901 bp Feature: gene Location: 3369911-3370828 bp Ori: AOM71395.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 3369947-3370802 bp Feature: domain Description: PFLE_PFLC Location: 3369947-3370802 bp Feature: gene Location: 3370965-3371870 bp Feature: gene Location: 3372356-3372895 bp Ori: AOM71397.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3372686-3372764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3372686-3372764 bp Feature: gene Location: 3372962-3373444 bp Ori: AOM71398.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3372971-3373211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3372971 -337321 1 bp Feature: domain Description: GIIM Note: maturase Location: 3373259-3373439 bp Feature: domain Description: GIIM Note: maturase Location: 3373259-3373439 bp Feature: gene Location: 3373832-3374020 bp Feature: gene Location: 3374093-3375322 bp Ori: AOM71400.1 Gene: ypdA_1 Feature: domain Description: YesM Location: 3374573-3375314 bp Feature: domain Description: YesM Location: 3374573-337531 4 bp Feature: gene Location: 4171746-4172204 bp Ori: AOM72159.1 Gene: dut Feature: domain Description: dut Location: 4171752-4172199 bp Feature: domain Description: dut Location: 41 71 752-41 721 99 bp Feature: gene Location: 4172311-4172907 bp Ori: AOM72160.1 Gene: slmA Feature: domain Description: slmA Location: 4172317-4172893 bp Feature: domain Description: slmA Location: 41 7231 7-41 72893 bp Feature: gene Location: 4172953-4173912 bp Ori: AOM72161.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4173088-4173637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 73088-41 73637 bp Feature: gene Location: 4174210-4174851 bp Ori: AOM72162.1 Gene: pyrE Feature: domain Description: pyrE Location: 4174213-4174846 bp Feature: domain Description: pyrE Location: 41 7421 3-41 74846 bp Feature: gene Location: 4174917-4175633 bp Ori: AOM72163.1 Gene: rph Feature: domain Description: rph Location: 4174920-4175628 bp Feature: domain Description: rph Location: 41 74920-41 75628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), PFLE_PFLC (TIGR02494), GIIM (pfam08388), YesM (COG2972), dut (TIGR00576), slmA (PRK09480)
RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: CP015838.1 Escherichia coli strain MS6198 plasmid pMS6198D, complete sequence (50899 bp)
Overview 1 RT 1: 26331-35155 bp Neighborhood of RT #1 [26331, 35280] PRK13704 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 26331-27050 bp Ori: AOM73554.1 Feature: domain Description: PRK13704 Location: 26334-27042 bp Feature: domain Description: PRK13704 Location: 2 6334-2 7042 bp Feature: gene Location: 27533-28813 bp Feature: gene Location: 29005-30906 bp Ori: AOM73556.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29272-30103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 72 -30103 bp Feature: domain Description: Intron_maturas2 Location: 30217-30475 bp Feature: domain Description: Intron_maturas2 Location: 302 17-30475 bp Feature: domain Description: HNHc Note: nucleases Location: 30649-30811 bp Feature: domain Description: HNHc Note: nucleases Location: 30649-30811 bp Feature: gene Location: 31481-32011 bp Feature: gene Location: 32725-34392 bp Ori: AOM73558.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 32773-33010 bp Feature: domain Description: RVT_N Location: 32 773-33010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33061-33703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33061-33703 bp Feature: domain Description: GIIM Note: maturase Location: 33754-33988 bp Feature: domain Description: GIIM Note: maturase Location: 33754-33988 bp Feature: domain Description: HNHc Note: nucleases Location: 34198-34357 bp Feature: domain Description: HNHc Note: nucleases Location: 34198-34357 bp Feature: gene Location: 34670-34861 bp Feature: gene Location: 34858-35280 bp Ori: AOM73560.1 Feature: domain Description: DUF1380 Location: 34861-35155 bp Feature: domain Description: DUF1380 Location: 34861-35155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), DUF1380 (pfam07128)