myRT

myRT report for GCA_001721905.1_ASM172190v1

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Seq: CP016166.1 Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p3 sequence (48256 bp)
Overview 1 RT 1: 33321-38476 bp Neighborhood of RT #1 [33321, 38526] PinE Tra8 RVT-AbiP2 Rve PhdYeFM_antitox Feature: gene Location: 33321-33884 bp Ori: AON62235.1 Feature: domain Description: PinE Location: 33333-33879 bp Feature: domain Description: PinE Location: 33333-33879 bp Feature: gene Location: 34527-35480 bp Ori: AON62236.1 Feature: domain Description: Tra8 Location: 34530-35457 bp Feature: domain Description: Tra8 Location: 34530-35457 bp Feature: gene Location: 35545-36933 bp Ori: AON62254.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 35806-36271 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 35806-36271 bp Feature: gene Location: 37208-37888 bp Ori: AON62237.1 Feature: domain Description: Rve Location: 37211-37859 bp Feature: domain Description: Rve Location: 3721 1 -37859 bp Feature: gene Location: 38257-38526 bp Ori: AON62238.1 Feature: domain Description: PhdYeFM_antitox Location: 38260-38476 bp Feature: domain Description: PhdYeFM_antitox Location: 38260-38476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Rve (COG3316), PhdYeFM_antitox (pfam02604)

Seq: CP016165.1 Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p2, complete sequence (58308 bp)
Overview 1 RT 1: 6310-12919 bp Neighborhood of RT #1 [6310, 13038] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 6310-6903 bp Feature: gene Location: 7066-8760 bp Ori: AON62148.1 Feature: domain Description: VirB4 Location: 7384-8068 bp Feature: domain Description: VirB4 Location: 7384-8068 bp Feature: gene Location: 9448-11325 bp Ori: AON62149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9763-10501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9763-10501 bp Feature: domain Description: HNHc Note: nucleases Location: 11059-11212 bp Feature: domain Description: HNHc Note: nucleases Location: 11059-112 12 bp Feature: gene Location: 11513-11833 bp Feature: gene Location: 11833-13038 bp Ori: AON62151.1 Feature: domain Description: Glucosaminidase Location: 12109-12505 bp Feature: domain Description: Glucosaminidase Location: 12 109-12 505 bp Feature: domain Description: Peptidase_M23 Location: 12682-12919 bp Feature: domain Description: Peptidase_M2 3 Location: 12 682 -12 919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: CP016164.1 Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p1 sequence (202822 bp)
Overview 1 RT 1: 291-2992 bp Neighborhood of RT #1 [291, 2997] RVT-GII MazE Feature: gene Location: 291-2167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606-1224 bp Feature: gene Location: 2355-2675 bp Feature: gene Location: 2734-2997 bp Ori: AON61939.1 Feature: domain Description: MazE Location: 2755-2992 bp Feature: domain Description: MazE Location: 2755-2992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MazE (COG2336)

Seq: CP016163.1 Enterococcus faecium strain ISMMS_VRE_11 chromosome, complete genome (2823158 bp)
Overview 1 RT 1: 457634-462823 bp Neighborhood of RT #1 [457634, 462900] TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 457634-458022 bp Feature: domain Description: TcpE Location: 457652-457814 bp Feature: domain Description: TcpE Location: 4 57652-4 57814 bp Feature: gene Location: 458082-458585 bp Ori: AON59776.1 Feature: domain Description: ArdA Location: 458100-458571 bp Feature: domain Description: ArdA Location: 4 58100-4 58571 bp Feature: gene Location: 458926-460836 bp Ori: AON59777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459259-459997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 59259-4 59997 bp Feature: domain Description: HNHc Note: nucleases Location: 460552-460717 bp Feature: domain Description: HNHc Note: nucleases Location: 4 60552-4 60717 bp Feature: gene Location: 461582-461701 bp Ori: AON59778.1 Feature: domain Description: DUF3789 Location: 461591-461684 bp Feature: domain Description: DUF3789 Location: 4 61591-4 61684 bp Feature: gene Location: 461716-462900 bp Ori: AON59779.1 Feature: domain Description: HTH_XRE Location: 461746-461890 bp Feature: domain Description: HTH_XRE Location: 4 6174 6-4 61890 bp Feature: domain Description: Rol_Rep_N Location: 461923-462187 bp Feature: domain Description: Rol_Rep_N Location: 4 61923-4 62187 bp Feature: domain Description: Rep_trans Location: 462211-462823 bp Feature: domain Description: Rep_trans Location: 4 62211-4 62823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)