myRT

myRT report for GCA_001729925.2_ASM172992v2

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Seq: CP016501.2 Streptococcus agalactiae strain WC1535 chromosome, complete genome (2189728 bp)
Overview 1 RT 1: 131471-138673 bp 2 RT 2: 186651-193600 bp 3 RT 3: 861257-868174 bp 4 RT 4: 1031134-1037162 bp 5 RT 5: 1091845-1102736 bp 6 RT 6: 1233514-1240892 bp 7 RT 7: 1284858-1291856 bp 8 RT 8: 1709654-1714183 bp 9 RT 9: 1886669-1891175 bp 10 RT 10: 1896507-1902278 bp Neighborhood of RT #1 [131471, 138673] Der HepA RVT-GII GIIM Neighborhood of RT #2 [186651, 193827] PRK12267 Branch_AA_trans RVT-GII GIIM PolyPPase_VTC_like DUF4956 Neighborhood of RT #3 [861257, 868194] MurE COG3442 RVT-GII GIIM lipoyltrans PRK11856 lipoamide_DH Neighborhood of RT #4 [1031134, 1037176] YraQ YcgQ RVT-GII GIIM PRK10416 Cof Neighborhood of RT #5 [1091845, 1102736] M13 Peptidase_M13_N RVT-GII GIIM strep_RK_lipo Inhibitor_I9 Peptidases_S8_C5a_Peptidase fn3_5 PTZ00121 Neighborhood of RT #6 [1233514, 1240900] PRK05764 PRK07246 RVT-GII GIIM PRK08643 TTHA1623-like_MBL-fold Neighborhood of RT #7 [1284858, 1291888] PRK09330 FtsA RVT-GII GIIM FtsQ murG Neighborhood of RT #8 [1709654, 1714194] PhoE RVT-GII GIIM DUF2992 NTP_transf_6 Neighborhood of RT #9 [1886669, 1891195] YkoI YkoI RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like MerR_1 Neighborhood of RT #10 [1896507, 1902295] Surf_Exclu_PgrA Surf_Exclu_PgrA Surf_Exclu_PgrA LPXTG_anchor RVT-GII GIIM rpmG rpmF Feature: gene Location: 131471-132781 bp Ori: AOQ19829.1 Feature: domain Description: Der Location: 131474-132779 bp Feature: domain Description: Der Location: 1 31 474-1 32779 bp Feature: gene Location: 132936-136034 bp Ori: AOQ19830.1 Feature: domain Description: HepA Location: 134478-136026 bp Feature: domain Description: HepA Location: 1 34478-1 36026 bp Feature: gene Location: 136607-137884 bp Ori: AOQ21715.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136811-137426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3681 1 -1 37426 bp Feature: domain Description: GIIM Note: maturase Location: 137480-137696 bp Feature: domain Description: GIIM Note: maturase Location: 1 37480-1 37696 bp Feature: gene Location: 137953-138051 bp Feature: gene Location: 138056-138673 bp Feature: gene Location: 186651-188648 bp Ori: AOQ19883.1 Gene: metG Feature: domain Description: PRK12267 Location: 186660-188643 bp Feature: domain Description: PRK1 2267 Location: 1 86660-1 88643 bp Feature: gene Location: 188844-190181 bp Ori: AOQ19884.1 Gene: brnQ Feature: domain Description: Branch_AA_trans Location: 188853-190137 bp Feature: domain Description: Branch_AA_trans Location: 1 88853-1 901 37 bp Feature: gene Location: 190757-192034 bp Ori: AOQ21720.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190961-191576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 90961 -1 91 576 bp Feature: domain Description: GIIM Note: maturase Location: 191630-191846 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 630-1 91 846 bp Feature: gene Location: 192403-193098 bp Ori: AOQ19885.1 Feature: domain Description: PolyPPase_VTC_like Location: 192421-193063 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 92421 -1 93063 bp Feature: gene Location: 193150-193827 bp Ori: AOQ19886.1 Feature: domain Description: DUF4956 Location: 193237-193600 bp Feature: domain Description: DUF4956 Location: 1 93237-1 93600 bp Feature: gene Location: 861257-862600 bp Ori: AOQ20493.1 Feature: domain Description: MurE Location: 861290-862595 bp Feature: domain Description: MurE Location: 861 290-862595 bp Feature: gene Location: 862600-863385 bp Ori: AOQ20494.1 Feature: domain Description: COG3442 Location: 862648-863374 bp Feature: domain Description: COG3442 Location: 862648-863374 bp Feature: gene Location: 863451-864728 bp Ori: AOQ21744.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863655-864270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863655-864270 bp Feature: domain Description: GIIM Note: maturase Location: 864324-864540 bp Feature: domain Description: GIIM Note: maturase Location: 864324-864540 bp Feature: gene Location: 865350-866339 bp Ori: AOQ20495.1 Feature: domain Description: lipoyltrans Location: 865365-866313 bp Feature: domain Description: lipoyltrans Location: 865365-86631 3 bp Feature: gene Location: 866437-868194 bp Ori: AOQ20496.1 Gene: lpdA Feature: domain Description: PRK11856 Location: 866440-866788 bp Feature: domain Description: PRK1 1 856 Location: 866440-866788 bp Feature: domain Description: lipoamide_DH Location: 866815-868174 bp Feature: domain Description: lipoamide_DH Location: 86681 5-8681 74 bp Feature: gene Location: 1031134-1032036 bp Ori: AOQ20641.1 Feature: domain Description: YraQ Location: 1031137-1032034 bp Feature: domain Description: YraQ Location: 1 031 1 37-1 032034 bp Feature: gene Location: 1032036-1032848 bp Ori: AOQ20642.1 Feature: domain Description: YcgQ Location: 1032039-1032846 bp Feature: domain Description: YcgQ Location: 1 032039-1 032846 bp Feature: gene Location: 1032914-1034191 bp Ori: AOQ21747.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033118-1033733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0331 1 8-1 033733 bp Feature: domain Description: GIIM Note: maturase Location: 1033787-1034003 bp Feature: domain Description: GIIM Note: maturase Location: 1 033787-1 034003 bp Feature: gene Location: 1034742-1036352 bp Ori: AOQ20643.1 Gene: ftsY Feature: domain Description: PRK10416 Location: 1035066-1036341 bp Feature: domain Description: PRK1 041 6 Location: 1 035066-1 036341 bp Feature: gene Location: 1036352-1037176 bp Ori: AOQ20644.1 Feature: domain Description: Cof Location: 1036361-1037162 bp Feature: domain Description: Cof Location: 1 036361 -1 0371 62 bp Feature: gene Location: 1091845-1092663 bp Ori: AOQ20693.1 Feature: domain Description: M13 Location: 1091848-1092550 bp Feature: domain Description: M1 3 Location: 1 091 848-1 092550 bp Feature: gene Location: 1092684-1093769 bp Ori: AOQ20694.1 Feature: domain Description: Peptidase_M13_N Location: 1092822-1093737 bp Feature: domain Description: Peptidase_M1 3_N Location: 1 092822-1 093737 bp Feature: gene Location: 1093919-1095196 bp Ori: AOQ21749.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094123-1094738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0941 23-1 094738 bp Feature: domain Description: GIIM Note: maturase Location: 1094792-1095008 bp Feature: domain Description: GIIM Note: maturase Location: 1 094792-1 095008 bp Feature: gene Location: 1095810-1102361 bp Feature: domain Description: strep_RK_lipo Location: 1095840-1095945 bp Feature: domain Description: strep_RK_lipo Location: 1 095840-1 095945 bp Feature: domain Description: Inhibitor_I9 Location: 1096449-1096731 bp Feature: domain Description: Inhibitor_I9 Location: 1 096449-1 096731 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 1096788-1098243 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 1 096788-1 098243 bp Feature: domain Description: fn3_5 Location: 1098306-1098630 bp Feature: domain Description: fn3_5 Location: 1 098306-1 098630 bp Feature: domain Description: PTZ00121 Location: 1101951-1102209 bp Feature: domain Description: PTZ001 21 Location: 1 1 01 951 -1 1 02209 bp Feature: gene Location: 1102395-1102736 bp Feature: gene Location: 1233514-1234707 bp Ori: AOQ20819.1 Feature: domain Description: PRK05764 Location: 1233520-1234693 bp Feature: domain Description: PRK05764 Location: 1 233520-1 234693 bp Feature: gene Location: 1234793-1237300 bp Ori: AOQ20820.1 Feature: domain Description: PRK07246 Location: 1234838-1237298 bp Feature: domain Description: PRK07246 Location: 1 234838-1 237298 bp Feature: gene Location: 1237430-1238707 bp Ori: AOQ21756.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1237634-1238249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 237634-1 238249 bp Feature: domain Description: GIIM Note: maturase Location: 1238303-1238519 bp Feature: domain Description: GIIM Note: maturase Location: 1 238303-1 23851 9 bp Feature: gene Location: 1239270-1240034 bp Ori: AOQ20821.1 Feature: domain Description: PRK08643 Location: 1239273-1240032 bp Feature: domain Description: PRK08643 Location: 1 239273-1 240032 bp Feature: gene Location: 1240202-1240900 bp Ori: AOQ20822.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 1240301-1240892 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 1 240301 -1 240892 bp Feature: gene Location: 1284858-1286138 bp Ori: AOQ20864.1 Gene: ftsZ Feature: domain Description: PRK09330 Location: 1284870-1286133 bp Feature: domain Description: PRK09330 Location: 1 284870-1 2861 33 bp Feature: gene Location: 1286160-1287533 bp Ori: AOQ20865.1 Gene: ftsA Feature: domain Description: FtsA Location: 1286163-1287528 bp Feature: domain Description: FtsA Location: 1 2861 63-1 287528 bp Feature: gene Location: 1287834-1289111 bp Ori: AOQ21757.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288038-1288653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 288038-1 288653 bp Feature: domain Description: GIIM Note: maturase Location: 1288707-1288923 bp Feature: domain Description: GIIM Note: maturase Location: 1 288707-1 288923 bp Feature: gene Location: 1289681-1290808 bp Ori: AOQ20866.1 Feature: domain Description: FtsQ Location: 1289927-1290641 bp Feature: domain Description: FtsQ Location: 1 289927-1 290641 bp Feature: gene Location: 1290812-1291888 bp Ori: AOQ20867.1 Feature: domain Description: murG Location: 1290821-1291856 bp Feature: domain Description: murG Location: 1 290821 -1 291 856 bp Feature: gene Location: 1709654-1710346 bp Ori: AOQ21246.1 Feature: domain Description: PhoE Location: 1709663-1710323 bp Feature: domain Description: PhoE Location: 1 709663-1 71 0323 bp Feature: gene Location: 1710468-1710902 bp Feature: gene Location: 1711163-1712440 bp Ori: AOQ21766.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711367-1711982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 1 367-1 71 1 982 bp Feature: domain Description: GIIM Note: maturase Location: 1712036-1712252 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 2036-1 71 2252 bp Feature: gene Location: 1713004-1713423 bp Ori: AOQ21248.1 Feature: domain Description: DUF2992 Location: 1713013-1713421 bp Feature: domain Description: DUF2992 Location: 1 71 301 3-1 71 3421 bp Feature: gene Location: 1713643-1714194 bp Ori: AOQ21249.1 Feature: domain Description: NTP_transf_6 Location: 1713703-1714183 bp Feature: domain Description: NTP_transf_6 Location: 1 71 3703-1 71 41 83 bp Feature: gene Location: 1886669-1887340 bp Ori: AOQ21403.1 Feature: domain Description: YkoI Location: 1886774-1887089 bp Feature: domain Description: YkoI Location: 1 886774-1 887089 bp Feature: domain Description: YkoI Location: 1887104-1887254 bp Feature: domain Description: YkoI Location: 1 8871 04-1 887254 bp Feature: gene Location: 1887519-1887731 bp Feature: gene Location: 1888096-1889373 bp Ori: AOQ21771.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1888300-1888915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 888300-1 88891 5 bp Feature: domain Description: GIIM Note: maturase Location: 1888969-1889185 bp Feature: domain Description: GIIM Note: maturase Location: 1 888969-1 8891 85 bp Feature: gene Location: 1889570-1890835 bp Ori: AOQ21404.1 Feature: domain Description: Phage_int_SAM_3 Location: 1889810-1889981 bp Feature: domain Description: Phage_int_SAM_3 Location: 1 88981 0-1 889981 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1890212-1890764 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 89021 2-1 890764 bp Feature: gene Location: 1890932-1891195 bp Ori: AOQ21405.1 Feature: domain Description: MerR_1 Location: 1891040-1891175 bp Feature: domain Description: MerR_1 Location: 1 891 040-1 891 1 75 bp Feature: gene Location: 1896507-1899344 bp Ori: AOQ21413.1 Feature: domain Description: Surf_Exclu_PgrA Location: 1896609-1896984 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 896609-1 896984 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1897086-1897389 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 897086-1 897389 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1897461-1898670 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 897461 -1 898670 bp Feature: domain Description: LPXTG_anchor Location: 1899243-1899336 bp Feature: domain Description: LPXTG_anchor Location: 1 899243-1 899336 bp Feature: gene Location: 1899349-1899810 bp Feature: gene Location: 1900371-1901648 bp Ori: AOQ21772.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1900575-1901190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 900575-1 901 1 90 bp Feature: domain Description: GIIM Note: maturase Location: 1901244-1901460 bp Feature: domain Description: GIIM Note: maturase Location: 1 901 244-1 901 460 bp Feature: gene Location: 1901948-1902097 bp Ori: AOQ21415.1 Gene: rpmG Feature: domain Description: rpmG Location: 1901951-1902095 bp Feature: domain Description: rpmG Location: 1 901 951 -1 902095 bp Feature: gene Location: 1902113-1902295 bp Ori: AOQ21416.1 Gene: rpmF Feature: domain Description: rpmF Location: 1902116-1902278 bp Feature: domain Description: rpmF Location: 1 9021 1 6-1 902278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Der (COG1160), HepA (COG0553), RVT-GII, GIIM (pfam08388), PRK12267 (methionyl-tRNA synthetase; Reviewed), Branch_AA_trans (pfam05525), PolyPPase_VTC_like (cd07750), DUF4956 (pfam16316), MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ )
lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), YraQ (COG0701), YcgQ (COG3689), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), Cof (COG0561), M13 (cd08662), Peptidase_M13_N (pfam05649), strep_RK_lipo (TIGR03726)
Inhibitor_I9 (pfam05922), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), PTZ00121 (MAEBL; Provisional), PRK05764 (aspartate aminotransferase; Provisional), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK08643 ((S)-acetoin forming diacetyl reductase), TTHA1623-like_MBL-fold (cd16322), PRK09330 (cell division protein FtsZ; Validated), FtsA (smart00842)
FtsQ (pfam03799), murG (TIGR01133), PhoE (COG0406), DUF2992 (pfam11208), NTP_transf_6 (pfam06042), YkoI (COG3212), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), MerR_1 (pfam13411), Surf_Exclu_PgrA (TIGR04320)
LPXTG_anchor (TIGR01167), rpmG (PRK00595), rpmF (PRK12286)