myRT

myRT report for GCA_001746555.1_ASM174655v1

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Seq: CP016332.1 Clostridium butyricum strain TK520 chromosome 1, complete sequence (3668139 bp)
Overview 1 RT 1: 2050161-2057310 bp 2 RT 2: 3108103-3114603 bp 3 RT 3: 3224431-3229244 bp Neighborhood of RT #1 [2050161, 2057312] PadR RVT-UG24 YdiU Neighborhood of RT #2 [3108103, 3114614] GT4_WlbH-like GalU RVT-GII HNHc GalU BaeS Neighborhood of RT #3 [3224431, 3229369] YveK GalU RVT-GII GalU DUF820 Feature: gene Location: 2050161-2050688 bp Ori: AOR94253.1 Feature: domain Description: PadR Location: 2050173-2050545 bp Feature: domain Description: PadR Location: 20501 73-2050545 bp Feature: gene Location: 2050789-2051148 bp Feature: gene Location: 2051405-2054665 bp Ori: AOR94254.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2051912-2052392 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2051 91 2-2052392 bp Feature: gene Location: 2054655-2055227 bp Feature: gene Location: 2055837-2057312 bp Ori: AOR94256.1 Feature: domain Description: YdiU Location: 2055867-2057310 bp Feature: domain Description: YdiU Location: 2055867-205731 0 bp Feature: gene Location: 3108103-3109185 bp Ori: AOR95158.1 Feature: domain Description: GT4_WlbH-like Location: 3108136-3109171 bp Feature: domain Description: GT4_WlbH-like Location: 31 081 36-31 091 71 bp Feature: gene Location: 3109561-3110244 bp Feature: domain Description: GalU Location: 3109567-3110209 bp Feature: domain Description: GalU Location: 31 09567-31 1 0209 bp Feature: gene Location: 3110362-3112173 bp Ori: AOR95159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3110680-3111376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 0680-31 1 1 376 bp Feature: domain Description: HNHc Note: nucleases Location: 3111925-3112063 bp Feature: domain Description: HNHc Note: nucleases Location: 31 1 1 925-31 1 2063 bp Feature: gene Location: 3112893-3113111 bp Ori: AOR95160.1 Feature: domain Description: GalU Location: 3112896-3113097 bp Feature: domain Description: GalU Location: 31 1 2896-31 1 3097 bp Feature: gene Location: 3113364-3114614 bp Ori: AOR95161.1 Feature: domain Description: BaeS Location: 3113724-3114603 bp Feature: domain Description: BaeS Location: 31 1 3724-31 1 4603 bp Feature: gene Location: 3224431-3225117 bp Ori: AOR95233.1 Feature: domain Description: YveK Location: 3224440-3225100 bp Feature: domain Description: YveK Location: 3224440-32251 00 bp Feature: gene Location: 3225573-3226250 bp Feature: domain Description: GalU Location: 3225579-3226227 bp Feature: domain Description: GalU Location: 3225579-3226227 bp Feature: gene Location: 3226368-3227678 bp Ori: AOR95234.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3226686-3227382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3226686-3227382 bp Feature: gene Location: 3228395-3228622 bp Ori: AOR95235.1 Feature: domain Description: GalU Location: 3228407-3228608 bp Feature: domain Description: GalU Location: 3228407-3228608 bp Feature: gene Location: 3228803-3229369 bp Ori: AOR95236.1 Feature: domain Description: DUF820 Location: 3228836-3229244 bp Feature: domain Description: DUF820 Location: 3228836-3229244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PadR (pfam03551), RVT-UG24, YdiU (COG0397), GT4_WlbH-like (cd03798), GalU (COG1210), RVT-GII, HNHc (smart00507), BaeS (COG0642), YveK (COG3944), DUF820

Seq: CP016333.1 Clostridium butyricum strain TK520 chromosome 2, complete sequence (787219 bp)
Overview 1 RT 1: 355901-364509 bp Neighborhood of RT #1 [355901, 364520] RVT-Retrons ADA MarR Feature: gene Location: 355901-358837 bp Feature: gene Location: 358837-360645 bp Feature: gene Location: 360642-362150 bp Ori: AOR95946.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 361278-361926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3612 78-36192 6 bp Feature: gene Location: 362738-363730 bp Ori: AOR95947.1 Feature: domain Description: ADA Location: 362753-363722 bp Feature: domain Description: ADA Location: 362 753-36372 2 bp Feature: gene Location: 364089-364520 bp Ori: AOR95948.1 Feature: domain Description: MarR Location: 364134-364509 bp Feature: domain Description: MarR Location: 364134-364509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ADA (cd01320), MarR (pfam01047)