myRT

myRT report for GCA_001750705.1_ASM175070v1

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Seq: CP017353.1 Pseudomonas aeruginosa strain FA-HZ1, complete genome (6866790 bp)
Overview 1 RT 1: 3322637-3332943 bp 2 RT 2: 3349201-3358031 bp 3 RT 3: 3817725-3825707 bp Neighborhood of RT #1 [3322637, 3332945] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [3349201, 3358060] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [3817725, 3825724] ABC_phnC DUF772 RVT-GII GIIM CHD CHD COG4271 Feature: gene Location: 3322637-3323758 bp Ori: AOT38577.1 Feature: domain Description: COG3177 Location: 3322655-3323747 bp Feature: domain Description: COG31 77 Location: 3322655-3323747 bp Feature: gene Location: 3324017-3324154 bp Feature: gene Location: 3324482-3326167 bp Ori: AOT38579.1 Feature: domain Description: RVT_N Location: 3324539-3324779 bp Feature: domain Description: RVT_N Location: 3324539-3324779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324827-3325463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324827-3325463 bp Feature: domain Description: GIIM Note: maturase Location: 3325517-3325748 bp Feature: domain Description: GIIM Note: maturase Location: 332551 7-3325748 bp Feature: domain Description: HNH Note: nucleases Location: 3326000-3326138 bp Feature: domain Description: HNH Note: nucleases Location: 3326000-33261 38 bp Feature: gene Location: 3327248-3330985 bp Ori: AOT38580.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 3327356-3328013 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3327356-332801 3 bp Feature: domain Description: PRK09776 Location: 3328226-3328697 bp Feature: domain Description: PRK09776 Location: 3328226-3328697 bp Feature: domain Description: PAS Location: 3328754-3329279 bp Feature: domain Description: PAS Location: 3328754-3329279 bp Feature: domain Description: PRK10060 Location: 3329288-3330935 bp Feature: domain Description: PRK1 0060 Location: 3329288-3330935 bp Feature: gene Location: 3331092-3332945 bp Ori: AOT38581.1 Feature: domain Description: PRK05658 Location: 3331104-3332943 bp Feature: domain Description: PRK05658 Location: 3331 1 04-3332943 bp Feature: gene Location: 3349201-3350493 bp Ori: AOT38598.1 Feature: domain Description: PRK10770 Location: 3349291-3350485 bp Feature: domain Description: PRK1 0770 Location: 3349291 -3350485 bp Feature: gene Location: 3350474-3353257 bp Ori: AOT38599.1 Feature: domain Description: LptD Location: 3350669-3353243 bp Feature: domain Description: LptD Location: 3350669-3353243 bp Feature: gene Location: 3353390-3355102 bp Ori: AOT38600.1 Feature: domain Description: RVT_N Location: 3353447-3353690 bp Feature: domain Description: RVT_N Location: 3353447-3353690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353735-3354371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353735-3354371 bp Feature: domain Description: YkfC Location: 3354578-3354731 bp Feature: domain Description: YkfC Location: 3354578-3354731 bp Feature: domain Description: HNH Note: nucleases Location: 3354908-3355046 bp Feature: domain Description: HNH Note: nucleases Location: 3354908-3355046 bp Feature: gene Location: 3356460-3357389 bp Ori: AOT38601.1 Feature: domain Description: COG3178 Location: 3356469-3357375 bp Feature: domain Description: COG31 78 Location: 3356469-3357375 bp Feature: gene Location: 3357386-3358060 bp Ori: AOT38602.1 Feature: domain Description: NTP_transferase_like_1 Location: 3357392-3358031 bp Feature: domain Description: NTP_transferase_like_1 Location: 3357392-3358031 bp Feature: gene Location: 3817725-3818552 bp Ori: AOT39017.1 Feature: domain Description: ABC_phnC Location: 3817755-3818469 bp Feature: domain Description: ABC_phnC Location: 381 7755-381 8469 bp Feature: gene Location: 3818895-3819536 bp Ori: AOT39018.1 Feature: domain Description: DUF772 Location: 3819045-3819240 bp Feature: domain Description: DUF772 Location: 381 9045-381 9240 bp Feature: gene Location: 3819925-3821193 bp Ori: AOT39019.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3820138-3820795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38201 38-3820795 bp Feature: domain Description: GIIM Note: maturase Location: 3820873-3821095 bp Feature: domain Description: GIIM Note: maturase Location: 3820873-3821 095 bp Feature: gene Location: 3823188-3824732 bp Ori: AOT39020.1 Feature: domain Description: CHD Location: 3823404-3823818 bp Feature: domain Description: CHD Location: 3823404-382381 8 bp Feature: domain Description: CHD Location: 3824046-3824535 bp Feature: domain Description: CHD Location: 3824046-3824535 bp Feature: gene Location: 3824813-3825724 bp Ori: AOT41721.1 Feature: domain Description: COG4271 Location: 3825038-3825707 bp Feature: domain Description: COG4271 Location: 3825038-3825707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain )