myRT

myRT report for GCA_001750845.1_ASM175084v1

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Seq: CP013193.1 Escherichia coli strain FORC_031 plasmid pFORC31.3, complete sequence (66990 bp)
Overview 1 RT 1: 33426-35767 bp Neighborhood of RT #1 [33426, 35767] PHA02517 InsE RVT-GII Feature: gene Location: 33426-34313 bp Ori: AOT35595.1 Feature: domain Description: PHA02517 Location: 33486-34311 bp Feature: domain Description: PHA0251 7 Location: 33486-3431 1 bp Feature: gene Location: 34313-34639 bp Ori: AOT35596.1 Feature: domain Description: InsE Location: 34316-34637 bp Feature: domain Description: InsE Location: 3431 6-34637 bp Feature: gene Location: 34665-35177 bp Ori: AOT35597.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34674-35043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34674-35043 bp Feature: gene Location: 35284-35529 bp Feature: gene Location: 35546-35767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII

Seq: CP013191.1 Escherichia coli strain FORC_031 plasmid pFORC31.1, complete sequence (106519 bp)
Overview 1 RT 1: 37777-41605 bp 2 RT 2: 72516-75493 bp Neighborhood of RT #1 [37777, 41605] DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM Neighborhood of RT #2 [72516, 75493] PHA02517 RVT-GII GIIM Feature: gene Location: 37777-37968 bp Ori: AOT35316.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 37837-37945 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 37837-37945 bp Feature: gene Location: 38942-39388 bp Ori: AOT35317.1 Feature: domain Description: PHA02517 Location: 38945-39386 bp Feature: domain Description: PHA02 517 Location: 38945-39386 bp Feature: gene Location: 39505-41013 bp Ori: AOT35318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39763-40495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39763-40495 bp Feature: domain Description: GIIM Note: maturase Location: 40570-40768 bp Feature: domain Description: GIIM Note: maturase Location: 40570-40768 bp Feature: gene Location: 41210-41323 bp Feature: gene Location: 41522-41605 bp Feature: gene Location: 72516-72689 bp Feature: gene Location: 72830-73276 bp Ori: AOT35374.1 Feature: domain Description: PHA02517 Location: 72833-73274 bp Feature: domain Description: PHA02 517 Location: 72 833-732 74 bp Feature: gene Location: 73393-74901 bp Ori: AOT35375.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73651-74383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73651-74383 bp Feature: domain Description: GIIM Note: maturase Location: 74458-74656 bp Feature: domain Description: GIIM Note: maturase Location: 74458-74656 bp Feature: gene Location: 75098-75211 bp Feature: gene Location: 75410-75493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CP013192.1 Escherichia coli strain FORC_031 plasmid pFORC31.2, complete sequence (57478 bp)
Overview 1 RT 1: 17015-21072 bp Neighborhood of RT #1 [17015, 21072] PRK13742 PHA02517 RVT-GII GIIM PHA02517 InsE RVT-GII Feature: gene Location: 17015-17443 bp Ori: AOT35465.1 Feature: domain Description: PRK13742 Location: 17087-17423 bp Feature: domain Description: PRK13 742 Location: 17087-17423 bp Feature: gene Location: 17574-17789 bp Ori: AOT35466.1 Feature: domain Description: PHA02517 Location: 17577-17787 bp Feature: domain Description: PHA02517 Location: 17577-17787 bp Feature: gene Location: 17942-18838 bp Ori: AOT35467.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18002-18320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18002-183 20 bp Feature: domain Description: GIIM Note: maturase Location: 18395-18593 bp Feature: domain Description: GIIM Note: maturase Location: 183 95-18593 bp Feature: gene Location: 18822-19709 bp Ori: AOT35468.1 Feature: domain Description: PHA02517 Location: 18882-19707 bp Feature: domain Description: PHA02517 Location: 18882-19707 bp Feature: gene Location: 19709-20035 bp Ori: AOT35469.1 Feature: domain Description: InsE Location: 19712-20033 bp Feature: domain Description: InsE Location: 19712-2003 3 bp Feature: gene Location: 20061-20762 bp Ori: AOT35470.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20319-20736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 19-2073 6 bp Feature: gene Location: 20801-20923 bp Feature: gene Location: 20959-21072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13742 (replication initiation protein RepE), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP013190.1 Escherichia coli strain FORC_031, complete genome (4830073 bp)
Overview 1 RT 1: 110232-116209 bp 2 RT 2: 2052462-2061479 bp 3 RT 3: 4174735-4178525 bp 4 RT 4: 4195703-4201896 bp Neighborhood of RT #1 [110232, 116877] InsE PHA02517 RVT-GII GIIM Inj_translocase Neighborhood of RT #2 [2052462, 2061529] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [4174735, 4178563] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4195703, 4201896] Psu RVT-UG5 nitrilase PRK09692 Feature: gene Location: 110232-110558 bp Ori: AOT30600.1 Feature: domain Description: InsE Location: 110235-110556 bp Feature: domain Description: InsE Location: 110235-110556 bp Feature: gene Location: 110558-111037 bp Ori: AOT30601.1 Feature: domain Description: PHA02517 Location: 110618-110972 bp Feature: domain Description: PHA02517 Location: 110618-110972 bp Feature: gene Location: 111644-113152 bp Ori: AOT30602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111902-112634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111902-112634 bp Feature: domain Description: GIIM Note: maturase Location: 112709-112907 bp Feature: domain Description: GIIM Note: maturase Location: 112709-112907 bp Feature: gene Location: 113522-115549 bp Feature: gene Location: 115534-116877 bp Ori: AOT30604.1 Feature: domain Description: Inj_translocase Location: 115570-116209 bp Feature: domain Description: Inj_translocase Location: 115570-116209 bp Feature: gene Location: 2052462-2057903 bp Ori: AOT32542.1 Feature: domain Description: DUF4011 Location: 2052759-2053092 bp Feature: domain Description: DUF4 011 Location: 2052759-2053092 bp Feature: domain Description: DEXXQc_SF1 Location: 2053449-2056551 bp Feature: domain Description: DEXXQc_SF1 Location: 20534 4 9-2056551 bp Feature: domain Description: SF1_C_Upf1 Location: 2056560-2057088 bp Feature: domain Description: SF1_C_Upf1 Location: 2056560-2057088 bp Feature: domain Description: MTES_1575 Location: 2057217-2057508 bp Feature: domain Description: MTES_1575 Location: 2057217-2057508 bp Feature: gene Location: 2058124-2058540 bp Ori: AOT32543.1 Feature: domain Description: PHA02517 Location: 2058127-2058532 bp Feature: domain Description: PHA02517 Location: 2058127-2058532 bp Feature: gene Location: 2058663-2060171 bp Ori: AOT32544.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058921-2059653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058921-2059653 bp Feature: domain Description: GIIM Note: maturase Location: 2059728-2059926 bp Feature: domain Description: GIIM Note: maturase Location: 2059728-2059926 bp Feature: gene Location: 2060778-2061203 bp Ori: AOT32545.1 Feature: domain Description: PHA02517 Location: 2060799-2061138 bp Feature: domain Description: PHA02517 Location: 2060799-2061138 bp Feature: gene Location: 2061203-2061529 bp Ori: AOT32546.1 Feature: domain Description: InsE Location: 2061215-2061479 bp Feature: domain Description: InsE Location: 2061215-20614 79 bp Feature: gene Location: 4174735-4174992 bp Feature: gene Location: 4175075-4175449 bp Ori: AOT34634.1 Feature: domain Description: PHA02517 Location: 4175078-4175429 bp Feature: domain Description: PHA02517 Location: 4 175078-4 1754 29 bp Feature: gene Location: 4175644-4177152 bp Ori: AOT34635.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175902-4176634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 175902-4 176634 bp Feature: domain Description: GIIM Note: maturase Location: 4176709-4176907 bp Feature: domain Description: GIIM Note: maturase Location: 4 176709-4 176907 bp Feature: gene Location: 4177759-4178238 bp Ori: AOT34636.1 Feature: domain Description: PHA02517 Location: 4177819-4178173 bp Feature: domain Description: PHA02517 Location: 4 177819-4 178173 bp Feature: gene Location: 4178345-4178563 bp Ori: AOT34637.1 Feature: domain Description: InsE Location: 4178348-4178525 bp Feature: domain Description: InsE Location: 4 17834 8-4 178525 bp Feature: gene Location: 4195703-4196260 bp Ori: AOT34662.1 Feature: domain Description: Psu Location: 4195721-4196243 bp Feature: domain Description: Psu Location: 4 195721-4 19624 3 bp Feature: gene Location: 4196462-4197151 bp Feature: gene Location: 4197148-4199910 bp Ori: AOT34664.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4197508-4198036 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 197508-4 198036 bp Feature: domain Description: nitrilase Location: 4199248-4199830 bp Feature: domain Description: nitrilase Location: 4 19924 8-4 199830 bp Feature: gene Location: 4200118-4201374 bp Ori: AOT34665.1 Feature: domain Description: PRK09692 Location: 4200127-4201330 bp Feature: domain Description: PRK09692 Location: 4 200127-4 201330 bp Feature: gene Location: 4201768-4201896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inj_translocase (pfam16928), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), Psu (pfam07455)
RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)