myRT

myRT report for GCA_001750885.1_ASM175088v1

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Seq: CP014530.1 Enterococcus faecium strain E745 plasmid pl1, complete sequence (223688 bp)
Overview 1 RT 1: 213828-222753 bp Neighborhood of RT #1 [213828, 222753] VirD4 VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 213828-215891 bp Feature: gene Location: 215891-217720 bp Ori: AOT80219.1 Feature: domain Description: VirD4 Location: 216302-217145 bp Feature: domain Description: VirD4 Location: 21 6302-21 71 45 bp Feature: domain Description: VirD4 Location: 217532-217694 bp Feature: domain Description: VirD4 Location: 21 7532-21 7694 bp Feature: gene Location: 218433-220331 bp Ori: AOT80220.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218754-219489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8754-21 9489 bp Feature: domain Description: HNH_4 Location: 220083-220188 bp Feature: domain Description: HNH_4 Location: 220083-2201 88 bp Feature: gene Location: 220457-221248 bp Ori: AOT80221.1 Feature: domain Description: TraG-D_C Location: 220460-220766 bp Feature: domain Description: TraG-D_C Location: 220460-220766 bp Feature: gene Location: 221245-222753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)

Seq: CP014535.1 Enterococcus faecium strain E745 plasmid pl6, complete sequence (65558 bp)
Overview 1 RT 1: 26983-36005 bp Neighborhood of RT #1 [26983, 36005] T4SS-DNA_transf T4SS-DNA_transf RVT-GII HNH_4 TraG-D_C Feature: gene Location: 26983-27699 bp Feature: gene Location: 27712-29529 bp Ori: AOT80406.1 Feature: domain Description: T4SS-DNA_transf Location: 28309-29041 bp Feature: domain Description: T4SS-DNA_transf Location: 2 8309-2 9041 bp Feature: domain Description: T4SS-DNA_transf Location: 29302-29506 bp Feature: domain Description: T4SS-DNA_transf Location: 2 9302 -2 9506 bp Feature: gene Location: 30242-32140 bp Ori: AOT80407.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30563-31298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30563-312 98 bp Feature: domain Description: HNH_4 Location: 31892-31997 bp Feature: domain Description: HNH_4 Location: 31892 -31997 bp Feature: gene Location: 32311-33318 bp Ori: AOT80408.1 Feature: domain Description: TraG-D_C Location: 32323-32563 bp Feature: domain Description: TraG-D_C Location: 32 32 3-32 563 bp Feature: gene Location: 33336-36005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)

Seq: CP014534.1 Enterococcus faecium strain E745 plasmid pl5, complete sequence (55167 bp)
Overview 1 RT 1: 33747-43530 bp Neighborhood of RT #1 [33747, 43530] TraG_VirD4 TraG_VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 33747-35801 bp Feature: gene Location: 35801-37633 bp Ori: AOT80348.1 Feature: domain Description: TraG_VirD4 Location: 36380-37058 bp Feature: domain Description: TraG_VirD4 Location: 3 63 80-3 7058 bp Feature: domain Description: TraG_VirD4 Location: 37445-37610 bp Feature: domain Description: TraG_VirD4 Location: 3 7445-3 7610 bp Feature: gene Location: 38346-40244 bp Ori: AOT80349.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38667-39402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8667-3 9402 bp Feature: domain Description: HNH_4 Location: 39996-40101 bp Feature: domain Description: HNH_4 Location: 3 9996-40101 bp Feature: gene Location: 40370-41161 bp Ori: AOT80350.1 Feature: domain Description: TraG-D_C Location: 40373-40679 bp Feature: domain Description: TraG-D_C Location: 403 73 -40679 bp Feature: gene Location: 41158-43530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)

Seq: CP014529.1 Enterococcus faecium strain E745, complete genome (2765010 bp)
Overview 1 RT 1: 1274451-1287349 bp 2 RT 2: 2630700-2643032 bp Neighborhood of RT #1 [1274451, 1287426] RelB_DinJ FtsK RVT-GII HNHc Dcm HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA PHP_HisPPase SMC_prok_B SMC_prok_B Neighborhood of RT #2 [2630700, 2643103] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE Feature: gene Location: 1274451-1274795 bp Ori: AOT78594.1 Feature: domain Description: RelB_DinJ Location: 1274661-1274790 bp Feature: domain Description: RelB_DinJ Location: 1274 661-1274 790 bp Feature: gene Location: 1274866-1276011 bp Ori: AOT78595.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 1275526-1275991 bp Feature: domain Description: FtsK Location: 1275526-1275991 bp Feature: gene Location: 1276726-1278585 bp Ori: AOT78596.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1277035-1277776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1277035-1277776 bp Feature: domain Description: HNHc Note: nucleases Location: 1278331-1278469 bp Feature: domain Description: HNHc Note: nucleases Location: 1278331-12784 69 bp Feature: gene Location: 1278679-1278930 bp Feature: gene Location: 1278990-1280132 bp Ori: AOT78598.1 Gene: hpaIIM Feature: domain Description: Dcm Location: 1278993-1280112 bp Feature: domain Description: Dcm Location: 1278993-1280112 bp Feature: gene Location: 1280667-1281851 bp Ori: AOT78600.1 Feature: domain Description: HTH_XRE Location: 1280697-1280841 bp Feature: domain Description: HTH_XRE Location: 1280697-128084 1 bp Feature: domain Description: Rol_Rep_N Location: 1280874-1281138 bp Feature: domain Description: Rol_Rep_N Location: 1280874 -1281138 bp Feature: domain Description: Rep_trans Location: 1281162-1281774 bp Feature: domain Description: Rep_trans Location: 1281162-1281774 bp Feature: gene Location: 1281848-1281985 bp Ori: AOT78601.1 Feature: domain Description: DUF3789 Location: 1281875-1281968 bp Feature: domain Description: DUF3789 Location: 1281875-1281968 bp Feature: gene Location: 1282731-1284641 bp Ori: AOT78602.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1283064-1283802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1283064 -1283802 bp Feature: domain Description: HNHc Note: nucleases Location: 1284357-1284522 bp Feature: domain Description: HNHc Note: nucleases Location: 1284 357-1284 522 bp Feature: gene Location: 1284982-1285482 bp Ori: AOT78603.1 Feature: domain Description: ArdA Location: 1285000-1285471 bp Feature: domain Description: ArdA Location: 1285000-12854 71 bp Feature: gene Location: 1285579-1287426 bp Ori: AOT78604.1 Feature: domain Description: PHP_HisPPase Location: 1285606-1286083 bp Feature: domain Description: PHP_HisPPase Location: 1285606-1286083 bp Feature: domain Description: SMC_prok_B Location: 1286485-1286584 bp Feature: domain Description: SMC_prok_B Location: 12864 85-1286584 bp Feature: domain Description: SMC_prok_B Location: 1286914-1287349 bp Feature: domain Description: SMC_prok_B Location: 1286914 -128734 9 bp Feature: gene Location: 2630700-2631035 bp Ori: AOT79898.1 Feature: domain Description: RelB_DinJ Location: 2630904-2631027 bp Feature: domain Description: RelB_DinJ Location: 2630904 -2631027 bp Feature: gene Location: 2631118-2632263 bp Ori: AOT79899.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2631778-2632243 bp Feature: domain Description: FtsK Location: 2631778-263224 3 bp Feature: gene Location: 2632978-2634837 bp Ori: AOT79900.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2633287-2634028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2633287-2634 028 bp Feature: domain Description: HNHc Note: nucleases Location: 2634583-2634721 bp Feature: domain Description: HNHc Note: nucleases Location: 2634 583-2634 721 bp Feature: gene Location: 2634931-2635170 bp Feature: gene Location: 2635248-2635922 bp Ori: AOT79902.1 Feature: domain Description: Zeta_toxin Location: 2635347-2635830 bp Feature: domain Description: Zeta_toxin Location: 263534 7-2635830 bp Feature: gene Location: 2637836-2639020 bp Ori: AOT79907.1 Feature: domain Description: HTH_XRE Location: 2637866-2638010 bp Feature: domain Description: HTH_XRE Location: 2637866-2638010 bp Feature: domain Description: Rol_Rep_N Location: 2638043-2638307 bp Feature: domain Description: Rol_Rep_N Location: 263804 3-2638307 bp Feature: domain Description: Rep_trans Location: 2638331-2638943 bp Feature: domain Description: Rep_trans Location: 2638331-263894 3 bp Feature: gene Location: 2639017-2639154 bp Ori: AOT79908.1 Feature: domain Description: DUF3789 Location: 2639044-2639137 bp Feature: domain Description: DUF3789 Location: 263904 4 -2639137 bp Feature: gene Location: 2639900-2641810 bp Ori: AOT79909.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2640233-2640971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264 0233-264 0971 bp Feature: domain Description: HNHc Note: nucleases Location: 2641526-2641691 bp Feature: domain Description: HNHc Note: nucleases Location: 264 1526-264 1691 bp Feature: gene Location: 2642151-2642654 bp Ori: AOT79910.1 Feature: domain Description: ArdA Location: 2642169-2642640 bp Feature: domain Description: ArdA Location: 264 2169-264 264 0 bp Feature: gene Location: 2642714-2643103 bp Ori: AOT79911.1 Feature: domain Description: TcpE Location: 2642732-2643032 bp Feature: domain Description: TcpE Location: 264 2732-264 3032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK (COG1674), RVT-GII, HNHc (smart00507), Dcm (COG0270), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), ArdA (pfam07275)
PHP_HisPPase (cd07432), SMC_prok_B (TIGR02168), Zeta_toxin (pfam06414), TcpE (pfam12648)