myRT

myRT report for GCA_001753225.1_ASM175322v1

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Seq: CP017420.1 Delftia tsuruhatensis strain CM13, complete genome (7195716 bp)
Overview 1 RT 1: 4868832-4877285 bp 2 RT 2: 5047074-5052530 bp Neighborhood of RT #1 [4868832, 4877285] AraC RVT-Retrons SWIM Neighborhood of RT #2 [5047074, 5052530] DUF3606 ExoIII-like_AP-endo ligD RVT-Retrons HTH_XRE Feature: gene Location: 4868832-4869215 bp Feature: gene Location: 4869247-4870059 bp Ori: AOV03927.1 Feature: domain Description: AraC Location: 4869712-4870042 bp Feature: domain Description: AraC Location: 486971 2-4870042 bp Feature: gene Location: 4870063-4872054 bp Ori: AOV03928.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4870636-4871263 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4870636-4871 263 bp Feature: gene Location: 4872362-4874092 bp Ori: AOV03929.1 Feature: domain Description: SWIM Location: 4873892-4874003 bp Feature: domain Description: SWIM Location: 4873892-4874003 bp Feature: gene Location: 4874124-4877285 bp Feature: gene Location: 5047074-5047256 bp Ori: AOV04054.1 Feature: domain Description: DUF3606 Location: 5047086-5047245 bp Feature: domain Description: DUF3606 Location: 5047086-5047245 bp Feature: gene Location: 5047261-5050674 bp Ori: AOV04055.1 Feature: domain Description: ExoIII-like_AP-endo Location: 5047267-5048017 bp Feature: domain Description: ExoIII-like_AP-endo Location: 5047267-504801 7 bp Feature: domain Description: ligD Location: 5048128-5050669 bp Feature: domain Description: ligD Location: 50481 28-5050669 bp Feature: gene Location: 5050956-5051978 bp Ori: AOV04056.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5051106-5051649 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5051 1 06-5051 649 bp Feature: gene Location: 5051941-5052249 bp Ori: AOV04057.1 Feature: domain Description: HTH_XRE Location: 5051953-5052103 bp Feature: domain Description: HTH_XRE Location: 5051 953-50521 03 bp Feature: gene Location: 5052297-5052530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), RVT-Retrons, SWIM (pfam04434), DUF3606 (pfam12244), ExoIII-like_AP-endo (cd09086), ligD (PRK09633), HTH_XRE (smart00530)