myRT

myRT report for GCA_001766275.1_ASM176627v1

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Seq: CP016868.1 Legionella pneumophila subsp. pneumophila strain FFI102, complete genome (3363654 bp)
Overview 1 RT 1: 1755809-1760714 bp 2 RT 2: 2683038-2687491 bp 3 RT 3: 2783903-2791544 bp Neighborhood of RT #1 [1755809, 1761262] conj_TOL_TraD RVT-Retrons Trypsin_2 Phage_int_SAM_2 Neighborhood of RT #2 [2683038, 2688384] TIGR03491 DUF772 RVT-UG18 SidC_N Neighborhood of RT #3 [2783903, 2791544] PRK05298 PRK05764 RVT-UG5 DUF5338 Feature: gene Location: 1755809-1756138 bp Feature: gene Location: 1756135-1758069 bp Feature: domain Description: conj_TOL_TraD Location: 1756153-1758061 bp Feature: domain Description: conj_TOL_TraD Location: 1 7561 53-1 758061 bp Feature: gene Location: 1758251-1759876 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1758380-1758983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 758380-1 758983 bp Feature: domain Description: Trypsin_2 Location: 1759367-1759787 bp Feature: domain Description: Trypsin_2 Location: 1 759367-1 759787 bp Feature: gene Location: 1760205-1760432 bp Feature: gene Location: 1760453-1761262 bp Feature: domain Description: Phage_int_SAM_2 Location: 1760507-1760714 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 760507-1 76071 4 bp Feature: gene Location: 2683038-2683532 bp Feature: domain Description: TIGR03491 Location: 2683074-2683518 bp Feature: domain Description: TIGR03491 Location: 2683074-268351 8 bp Feature: gene Location: 2683619-2685040 bp Feature: domain Description: DUF772 Location: 2683811-2683991 bp Feature: domain Description: DUF772 Location: 268381 1 -2683991 bp Feature: gene Location: 2685125-2685838 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2685416-2685779 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 268541 6-2685779 bp Feature: gene Location: 2685902-2686111 bp Feature: gene Location: 2686153-2688384 bp Feature: domain Description: SidC_N Location: 2686162-2687491 bp Feature: domain Description: SidC_N Location: 26861 62-2687491 bp Feature: gene Location: 2783903-2785894 bp Feature: domain Description: PRK05298 Location: 2783912-2785886 bp Feature: domain Description: PRK05298 Location: 278391 2-2785886 bp Feature: gene Location: 2785941-2787119 bp Feature: domain Description: PRK05764 Location: 2785953-2787114 bp Feature: domain Description: PRK05764 Location: 2785953-27871 1 4 bp Feature: gene Location: 2787433-2790552 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2787985-2788477 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2787985-2788477 bp Feature: gene Location: 2790857-2791222 bp Feature: domain Description: DUF5338 Location: 2790866-2791073 bp Feature: domain Description: DUF5338 Location: 2790866-2791 073 bp Feature: gene Location: 2791404-2791544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_TOL_TraD (TIGR03754), RVT-Retrons, Trypsin_2 (pfam13365), Phage_int_SAM_2 (pfam12834), TIGR03491 (RecB family nuclease, putative, TM0106 family), DUF772 (pfam05598), RVT-UG18, SidC_N (pfam18219), PRK05298 (excinuclease ABC subunit UvrB), PRK05764 (aspartate aminotransferase; Provisional)
RVT-UG5, DUF5338 (pfam17273)

Seq: CP016869.1 Legionella pneumophila subsp. pneumophila strain FFI102 plasmid, complete sequence (68145 bp)
Overview 1 RT 1: 57175-61523 bp Neighborhood of RT #1 [57175, 61549] Avd_like RVT-DGRs DUF772 IS5 xerC Feature: gene Location: 57175-57516 bp Feature: domain Description: Avd_like Location: 57202-57508 bp Feature: domain Description: Avd_like Location: 572 02 -57508 bp Feature: gene Location: 57411-57815 bp Feature: gene Location: 57867-59063 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58083-58782 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58083-58782 bp Feature: gene Location: 59082-60539 bp Feature: domain Description: DUF772 Location: 59265-59460 bp Feature: domain Description: DUF772 Location: 592 65-59460 bp Feature: domain Description: IS5 Location: 60120-60261 bp Feature: domain Description: IS5 Location: 6012 0-602 61 bp Feature: gene Location: 60668-61549 bp Feature: domain Description: xerC Location: 60680-61523 bp Feature: domain Description: xerC Location: 60680-6152 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF772 (pfam05598), IS5 (COG3039), xerC (PRK01287)