myRT

myRT report for GCA_001766295.1_ASM176629v1

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Seq: CP016870.1 Legionella pneumophila subsp. pneumophila strain FFI103, complete genome (3363616 bp)
Overview 1 RT 1: 217615-223068 bp 2 RT 2: 2550959-2558592 bp 3 RT 3: 2654118-2659450 bp Neighborhood of RT #1 [217615, 223068] Phage_int_SAM_2 RVT-Retrons Trypsin_2 conj_TOL_TraD Neighborhood of RT #2 [2550959, 2558600] DUF5338 RVT-UG5 PRK05764 PRK05298 Neighborhood of RT #3 [2654118, 2659464] SidC_N RVT-UG18 DUF772 TIGR03491 Feature: gene Location: 217615-218421 bp Feature: domain Description: Phage_int_SAM_2 Location: 217666-217873 bp Feature: domain Description: Phage_int_SAM_2 Location: 21 7666-21 7873 bp Feature: gene Location: 218445-218672 bp Feature: gene Location: 219001-220626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 219130-219733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 91 30-21 9733 bp Feature: domain Description: Trypsin_2 Location: 220117-220537 bp Feature: domain Description: Trypsin_2 Location: 2201 1 7-220537 bp Feature: gene Location: 220808-222742 bp Feature: domain Description: conj_TOL_TraD Location: 220826-222734 bp Feature: domain Description: conj_TOL_TraD Location: 220826-222734 bp Feature: gene Location: 222739-223068 bp Feature: gene Location: 2550959-2551099 bp Feature: gene Location: 2551281-2551646 bp Feature: domain Description: DUF5338 Location: 2551290-2551497 bp Feature: domain Description: DUF5338 Location: 2551 290-2551 497 bp Feature: gene Location: 2551951-2555070 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2552503-2552995 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2552503-2552995 bp Feature: gene Location: 2555384-2556562 bp Feature: domain Description: PRK05764 Location: 2555396-2556557 bp Feature: domain Description: PRK05764 Location: 2555396-2556557 bp Feature: gene Location: 2556609-2558600 bp Feature: domain Description: PRK05298 Location: 2556618-2558592 bp Feature: domain Description: PRK05298 Location: 255661 8-2558592 bp Feature: gene Location: 2654118-2656349 bp Feature: domain Description: SidC_N Location: 2654127-2655456 bp Feature: domain Description: SidC_N Location: 26541 27-2655456 bp Feature: gene Location: 2656391-2656600 bp Feature: gene Location: 2656664-2657377 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2656955-2657318 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 2656955-265731 8 bp Feature: gene Location: 2657462-2658883 bp Feature: domain Description: DUF772 Location: 2657654-2657834 bp Feature: domain Description: DUF772 Location: 2657654-2657834 bp Feature: gene Location: 2658970-2659464 bp Feature: domain Description: TIGR03491 Location: 2659006-2659450 bp Feature: domain Description: TIGR03491 Location: 2659006-2659450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), RVT-Retrons, Trypsin_2 (pfam13365), conj_TOL_TraD (TIGR03754), DUF5338 (pfam17273), RVT-UG5, PRK05764 (aspartate aminotransferase; Provisional), PRK05298 (excinuclease ABC subunit UvrB), SidC_N (pfam18219), RVT-UG18
DUF772 (pfam05598), TIGR03491 (RecB family nuclease, putative, TM0106 family)

Seq: CP016871.1 Legionella pneumophila subsp. pneumophila strain FFI103 plasmid, complete sequence (68145 bp)
Overview 1 RT 1: 29360-35248 bp Neighborhood of RT #1 [29360, 35262] xerC DUF772 IS5 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29360-30241 bp Feature: domain Description: xerC Location: 29372-30215 bp Feature: domain Description: xerC Location: 2 9372 -302 15 bp Feature: gene Location: 30370-31827 bp Feature: domain Description: DUF772 Location: 30553-30748 bp Feature: domain Description: DUF772 Location: 30553-30748 bp Feature: domain Description: IS5 Location: 31408-31549 bp Feature: domain Description: IS5 Location: 31408-31549 bp Feature: gene Location: 31846-33042 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32062-32761 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32 062 -32 761 bp Feature: gene Location: 33393-33734 bp Feature: domain Description: Avd_like Location: 33420-33726 bp Feature: domain Description: Avd_like Location: 3342 0-3372 6 bp Feature: gene Location: 33808-35262 bp Feature: domain Description: DUF1566 Location: 34924-35248 bp Feature: domain Description: DUF1566 Location: 3492 4-352 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerC (PRK01287), DUF772 (pfam05598), IS5 (COG3039), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)