myRT

myRT report for GCA_001766355.1_ASM176635v1

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Seq: CP016874.1 Legionella pneumophila subsp. pneumophila strain FFI329, complete genome (3363658 bp)
Overview 1 RT 1: 725611-730516 bp 2 RT 2: 1652842-1657295 bp 3 RT 3: 1753707-1761348 bp Neighborhood of RT #1 [725611, 731064] conj_TOL_TraD RVT-Retrons Trypsin_2 Phage_int_SAM_2 Neighborhood of RT #2 [1652842, 1658188] TIGR03491 DUF772 RVT-UG18 SidC_N Neighborhood of RT #3 [1753707, 1761348] PRK05298 PRK05764 RVT-UG5 DUF5338 Feature: gene Location: 725611-725940 bp Feature: gene Location: 725937-727871 bp Feature: domain Description: conj_TOL_TraD Location: 725955-727863 bp Feature: domain Description: conj_TOL_TraD Location: 725955-727863 bp Feature: gene Location: 728053-729678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 728182-728785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7281 82-728785 bp Feature: domain Description: Trypsin_2 Location: 729169-729589 bp Feature: domain Description: Trypsin_2 Location: 7291 69-729589 bp Feature: gene Location: 730007-730234 bp Feature: gene Location: 730255-731064 bp Feature: domain Description: Phage_int_SAM_2 Location: 730309-730516 bp Feature: domain Description: Phage_int_SAM_2 Location: 730309-73051 6 bp Feature: gene Location: 1652842-1653336 bp Feature: domain Description: TIGR03491 Location: 1652878-1653322 bp Feature: domain Description: TIGR03491 Location: 1 652878-1 653322 bp Feature: gene Location: 1653423-1654844 bp Feature: domain Description: DUF772 Location: 1653615-1653795 bp Feature: domain Description: DUF772 Location: 1 65361 5-1 653795 bp Feature: gene Location: 1654929-1655642 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1655220-1655583 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 1 655220-1 655583 bp Feature: gene Location: 1655706-1655915 bp Feature: gene Location: 1655957-1658188 bp Feature: domain Description: SidC_N Location: 1655966-1657295 bp Feature: domain Description: SidC_N Location: 1 655966-1 657295 bp Feature: gene Location: 1753707-1755698 bp Feature: domain Description: PRK05298 Location: 1753716-1755690 bp Feature: domain Description: PRK05298 Location: 1 75371 6-1 755690 bp Feature: gene Location: 1755745-1756923 bp Feature: domain Description: PRK05764 Location: 1755757-1756918 bp Feature: domain Description: PRK05764 Location: 1 755757-1 75691 8 bp Feature: gene Location: 1757237-1760356 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1757789-1758281 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 757789-1 758281 bp Feature: gene Location: 1760661-1761026 bp Feature: domain Description: DUF5338 Location: 1760670-1760877 bp Feature: domain Description: DUF5338 Location: 1 760670-1 760877 bp Feature: gene Location: 1761208-1761348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_TOL_TraD (TIGR03754), RVT-Retrons, Trypsin_2 (pfam13365), Phage_int_SAM_2 (pfam12834), TIGR03491 (RecB family nuclease, putative, TM0106 family), DUF772 (pfam05598), RVT-UG18, SidC_N (pfam18219), PRK05298 (excinuclease ABC subunit UvrB), PRK05764 (aspartate aminotransferase; Provisional)
RVT-UG5, DUF5338 (pfam17273)

Seq: CP016875.1 Legionella pneumophila subsp. pneumophila strain FFI329 plasmid, complete sequence (68146 bp)
Overview 1 RT 1: 15634-21522 bp Neighborhood of RT #1 [15634, 21536] xerC DUF772 IS5 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 15634-16515 bp Feature: domain Description: xerC Location: 15646-16489 bp Feature: domain Description: xerC Location: 15646-16489 bp Feature: gene Location: 16644-18101 bp Feature: domain Description: DUF772 Location: 16827-17022 bp Feature: domain Description: DUF772 Location: 1682 7-1702 2 bp Feature: domain Description: IS5 Location: 17682-17823 bp Feature: domain Description: IS5 Location: 17682 -1782 3 bp Feature: gene Location: 18120-19316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18336-19035 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18336-19035 bp Feature: gene Location: 19667-20008 bp Feature: domain Description: Avd_like Location: 19694-20000 bp Feature: domain Description: Avd_like Location: 19694-2 0000 bp Feature: gene Location: 20082-21536 bp Feature: domain Description: DUF1566 Location: 21198-21522 bp Feature: domain Description: DUF1566 Location: 2 1198-2 152 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerC (PRK01287), DUF772 (pfam05598), IS5 (COG3039), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)