myRT

myRT report for GCA_001806265.1_ASM180626v1

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Seq: CP017249.1 Escherichia coli strain NADC 5570/86-24/6565 chromosome, complete genome (5467107 bp)
Overview 1 RT 1: 2407307-2411852 bp Neighborhood of RT #1 [2407307, 2411869] Minor_tail_Z Phage_tail_U RVT_N RVT-GII YkfC HNHc YjdB phage_lambda_G Feature: gene Location: 2407307-2407885 bp Ori: AOX52220.1 Feature: domain Description: Minor_tail_Z Location: 2407316-2407883 bp Feature: domain Description: Minor_tail_Z Location: 240731 6-2407883 bp Feature: gene Location: 2407882-2408211 bp Ori: AOX52221.1 Feature: domain Description: Phage_tail_U Location: 2407885-2408173 bp Feature: domain Description: Phage_tail_U Location: 2407885-24081 73 bp Feature: gene Location: 2408244-2409968 bp Ori: AOX52222.1 Feature: domain Description: RVT_N Location: 2408301-2408538 bp Feature: domain Description: RVT_N Location: 2408301 -2408538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2408589-2409237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2408589-2409237 bp Feature: domain Description: YkfC Location: 2409369-2409525 bp Feature: domain Description: YkfC Location: 2409369-2409525 bp Feature: domain Description: HNHc Note: nucleases Location: 2409753-2409912 bp Feature: domain Description: HNHc Note: nucleases Location: 2409753-240991 2 bp Feature: gene Location: 2410691-2411431 bp Ori: AOX55093.1 Feature: domain Description: YjdB Location: 2410697-2411426 bp Feature: domain Description: YjdB Location: 241 0697-241 1 426 bp Feature: gene Location: 2411447-2411869 bp Ori: AOX52223.1 Feature: domain Description: phage_lambda_G Location: 2411450-2411852 bp Feature: domain Description: phage_lambda_G Location: 241 1 450-241 1 852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Minor_tail_Z (pfam06763), Phage_tail_U (pfam06141), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YjdB (COG5492), phage_lambda_G (TIGR01674)

Seq: CP017250.1 Escherichia coli strain NADC 5570/86-24/6565 plasmid pO157, complete sequence (92690 bp)
Overview 1 RT 1: 79651-86097 bp Neighborhood of RT #1 [79651, 86099] DUF1281 DUF1281_C RVT_N RVT-GII PRK13698 PRK13705 Feature: gene Location: 79651-79956 bp Feature: gene Location: 79960-80862 bp Ori: AOX55316.1 Feature: domain Description: DUF1281 Location: 80029-80557 bp Feature: domain Description: DUF12 81 Location: 8002 9-80557 bp Feature: domain Description: DUF1281_C Location: 80563-80791 bp Feature: domain Description: DUF12 81_C Location: 80563-80791 bp Feature: gene Location: 80939-82662 bp Feature: domain Description: RVT_N Location: 80996-81233 bp Feature: domain Description: RVT_N Location: 80996-812 33 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81284-81656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812 84-81656 bp Feature: gene Location: 83962-84933 bp Ori: AOX55317.1 Feature: domain Description: PRK13698 Location: 83965-84928 bp Feature: domain Description: PRK13698 Location: 83965-8492 8 bp Feature: gene Location: 84933-86099 bp Ori: AOX55318.1 Feature: domain Description: PRK13705 Location: 84936-86097 bp Feature: domain Description: PRK13705 Location: 84936-86097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, PRK13698 (ParB/RepB/Spo0J family plasmid partition protein), PRK13705 (plasmid-partitioning protein SopA; Provisional)