myRT

myRT report for GCA_001854185.1_ASM185418v1

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Seq: CP017603.1 Clostridium formicaceticum strain ATCC 27076, complete genome (4586755 bp)
Overview 1 RT 1: 347143-354041 bp 2 RT 2: 1082887-1090151 bp 3 RT 3: 2907251-2914372 bp 4 RT 4: 3214501-3219755 bp 5 RT 5: 3413245-3416478 bp 6 RT 6: 3484377-3494141 bp 7 RT 7: 3759807-3765594 bp 8 RT 8: 4016344-4028764 bp 9 RT 9: 4183352-4188480 bp 10 RT 10: 4215994-4220650 bp Neighborhood of RT #1 [347143, 354115] dnaE McrA RVT-GII RVT-GII dnaE DUF1638 Neighborhood of RT #2 [1082887, 1090213] RVT-UG3 RVT-UG8 SPOUT_MTase InsQ Neighborhood of RT #3 [2907251, 2914377] PRK06526 HTH_23 COG4584 RVT-GII GIIM RVT-GII GIIM Calci_bind_CcbP yugu Neighborhood of RT #4 [3214501, 3219766] LysM LysM LysM RtcB RtcB RVT-GII Intron_maturas2 HNHc RtcB Peptidase_M56 Neighborhood of RT #5 [3413245, 3416942] Amidase_2 XhlA RVT-DGRs Avd_like FGE-sulfatase Neighborhood of RT #6 [3484377, 3494141] RNase_Y recA RVT-GII Intron_maturas2 HNHc recA RVT_N RVT-GII GIIM HNHc Neighborhood of RT #7 [3759807, 3765594] BaeS ProX_deacylase RVT-GII GIIM ManC Neighborhood of RT #8 [4016344, 4028775] COG2361 COG1669 RVT-GII Creatininase LUD_dom RVT-GII Asp_protease_2 PTZ00330 RVT-GII GIIM integrase_gron integrase_gron Neighborhood of RT #9 [4183352, 4188480] Methyltransf_25 Acetyltransf_1 RVT-GII DUF2992 Neighborhood of RT #10 [4215994, 4221003] Cation_efflux Y1_Tnp RVT-Retrons PRTase_2 Feature: gene Location: 347143-348273 bp Ori: AOY74756.1 Feature: domain Description: dnaE Location: 347146-348271 bp Feature: domain Description: dnaE Location: 3471 46-348271 bp Feature: gene Location: 348498-349043 bp Ori: AOY74757.1 Feature: domain Description: McrA Location: 348774-349026 bp Feature: domain Description: McrA Location: 348774-349026 bp Feature: gene Location: 349292-349513 bp Ori: AOY74758.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349295-349472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349295-349472 bp Feature: gene Location: 349504-349953 bp Ori: AOY74759.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349807-349942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349807-349942 bp Feature: gene Location: 350659-352983 bp Gene: dnaE Feature: domain Description: dnaE Location: 350716-352981 bp Feature: domain Description: dnaE Location: 35071 6-352981 bp Feature: gene Location: 353459-354115 bp Ori: AOY74760.1 Feature: domain Description: DUF1638 Location: 353549-354041 bp Feature: domain Description: DUF1 638 Location: 353549-354041 bp Feature: gene Location: 1082887-1083189 bp Feature: gene Location: 1083558-1085111 bp Feature: gene Location: 1085303-1086607 bp Ori: AOY75324.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1085603-1086074 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 085603-1 086074 bp Feature: gene Location: 1086842-1088791 bp Ori: AOY75325.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1087352-1087796 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 087352-1 087796 bp Feature: gene Location: 1089162-1089641 bp Ori: AOY75326.1 Feature: domain Description: SPOUT_MTase Location: 1089168-1089636 bp Feature: domain Description: SPOUT_MTase Location: 1 0891 68-1 089636 bp Feature: gene Location: 1089734-1090213 bp Feature: domain Description: InsQ Location: 1089749-1090151 bp Feature: domain Description: InsQ Location: 1 089749-1 0901 51 bp Feature: gene Location: 2907251-2908012 bp Ori: AOY76714.1 Feature: domain Description: PRK06526 Location: 2907278-2907986 bp Feature: domain Description: PRK06526 Location: 2907278-2907986 bp Feature: gene Location: 2908009-2909592 bp Ori: AOY76715.1 Feature: domain Description: HTH_23 Location: 2908018-2908141 bp Feature: domain Description: HTH_23 Location: 290801 8-29081 41 bp Feature: domain Description: COG4584 Location: 2908345-2908879 bp Feature: domain Description: COG4584 Location: 2908345-2908879 bp Feature: gene Location: 2909775-2910716 bp Ori: AOY76716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2909781-2910345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2909781 -291 0345 bp Feature: domain Description: GIIM Note: maturase Location: 2910426-2910645 bp Feature: domain Description: GIIM Note: maturase Location: 291 0426-291 0645 bp Feature: gene Location: 2911305-2912615 bp Ori: AOY76717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2911605-2912244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 1 605-291 2244 bp Feature: domain Description: GIIM Note: maturase Location: 2912325-2912544 bp Feature: domain Description: GIIM Note: maturase Location: 291 2325-291 2544 bp Feature: gene Location: 2912820-2913173 bp Ori: AOY76718.1 Feature: domain Description: Calci_bind_CcbP Location: 2912904-2913162 bp Feature: domain Description: Calci_bind_CcbP Location: 291 2904-291 31 62 bp Feature: gene Location: 2913961-2914377 bp Ori: AOY76719.1 Feature: domain Description: yugu Location: 2913973-2914372 bp Feature: domain Description: yugu Location: 291 3973-291 4372 bp Feature: gene Location: 3214501-3215028 bp Ori: AOY77012.1 Feature: domain Description: LysM Location: 3214531-3214660 bp Feature: domain Description: LysM Location: 321 4531 -321 4660 bp Feature: domain Description: LysM Location: 3214708-3214834 bp Feature: domain Description: LysM Location: 321 4708-321 4834 bp Feature: domain Description: LysM Location: 3214906-3215020 bp Feature: domain Description: LysM Location: 321 4906-321 5020 bp Feature: gene Location: 3215377-3215817 bp Feature: domain Description: RtcB Location: 3215494-3215704 bp Feature: domain Description: RtcB Location: 321 5494-321 5704 bp Feature: domain Description: RtcB Location: 3215722-3215818 bp Feature: domain Description: RtcB Location: 321 5722-321 581 8 bp Feature: gene Location: 3216410-3218221 bp Ori: AOY77013.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3216674-3217505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 6674-321 7505 bp Feature: domain Description: Intron_maturas2 Location: 3217682-3217922 bp Feature: domain Description: Intron_maturas2 Location: 321 7682-321 7922 bp Feature: domain Description: HNHc Note: nucleases Location: 3218054-3218198 bp Feature: domain Description: HNHc Note: nucleases Location: 321 8054-321 81 98 bp Feature: gene Location: 3218336-3219076 bp Ori: AOY77014.1 Feature: domain Description: RtcB Location: 3218351-3219062 bp Feature: domain Description: RtcB Location: 321 8351 -321 9062 bp Feature: gene Location: 3219533-3219766 bp Ori: AOY77015.1 Feature: domain Description: Peptidase_M56 Location: 3219563-3219755 bp Feature: domain Description: Peptidase_M56 Location: 321 9563-321 9755 bp Feature: gene Location: 3413245-3413772 bp Feature: domain Description: Amidase_2 Location: 3413311-3413695 bp Feature: domain Description: Amidase_2 Location: 341 331 1 -341 3695 bp Feature: gene Location: 3413787-3414032 bp Ori: AOY77176.1 Feature: domain Description: XhlA Location: 3413826-3414021 bp Feature: domain Description: XhlA Location: 341 3826-341 4021 bp Feature: gene Location: 3414098-3415183 bp Ori: AOY77177.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3414308-3414968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 341 4308-341 4968 bp Feature: gene Location: 3415497-3415838 bp Ori: AOY77178.1 Feature: domain Description: Avd_like Location: 3415518-3415830 bp Feature: domain Description: Avd_like Location: 341 551 8-341 5830 bp Feature: gene Location: 3415911-3416942 bp Ori: AOY77179.1 Feature: domain Description: FGE-sulfatase Location: 3416160-3416478 bp Feature: domain Description: FGE-sulfatase Location: 341 61 60-341 6478 bp Feature: gene Location: 3484377-3485918 bp Ori: AOY77256.1 Feature: domain Description: RNase_Y Location: 3484398-3485916 bp Feature: domain Description: RNase_Y Location: 3484398-348591 6 bp Feature: gene Location: 3486495-3486911 bp Feature: domain Description: recA Location: 3486498-3486885 bp Feature: domain Description: recA Location: 3486498-3486885 bp Feature: gene Location: 3487049-3489079 bp Ori: AOY77257.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3487313-3488300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348731 3-3488300 bp Feature: domain Description: Intron_maturas2 Location: 3488381-3488678 bp Feature: domain Description: Intron_maturas2 Location: 3488381 -3488678 bp Feature: domain Description: HNHc Note: nucleases Location: 3488873-3488996 bp Feature: domain Description: HNHc Note: nucleases Location: 3488873-3488996 bp Feature: gene Location: 3489745-3489945 bp Ori: AOY77258.1 Feature: domain Description: recA Location: 3489748-3489928 bp Feature: domain Description: recA Location: 3489748-3489928 bp Feature: gene Location: 3490280-3492049 bp Ori: AOY77259.1 Feature: domain Description: RVT_N Location: 3490328-3490571 bp Feature: domain Description: RVT_N Location: 3490328-3490571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3490628-3491285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3490628-3491 285 bp Feature: domain Description: GIIM Note: maturase Location: 3491348-3491582 bp Feature: domain Description: GIIM Note: maturase Location: 3491 348-3491 582 bp Feature: domain Description: HNHc Note: nucleases Location: 3491783-3491945 bp Feature: domain Description: HNHc Note: nucleases Location: 3491 783-3491 945 bp Feature: gene Location: 3493316-3493510 bp Feature: gene Location: 3493956-3494141 bp Feature: gene Location: 3759807-3760592 bp Ori: AOY77505.1 Feature: domain Description: BaeS Location: 3759813-3760512 bp Feature: domain Description: BaeS Location: 375981 3-376051 2 bp Feature: gene Location: 3760942-3761415 bp Ori: AOY77506.1 Feature: domain Description: ProX_deacylase Location: 3760954-3761395 bp Feature: domain Description: ProX_deacylase Location: 3760954-3761 395 bp Feature: gene Location: 3761659-3762969 bp Ori: AOY77507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3761959-3762598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3761 959-3762598 bp Feature: domain Description: GIIM Note: maturase Location: 3762679-3762898 bp Feature: domain Description: GIIM Note: maturase Location: 3762679-3762898 bp Feature: gene Location: 3763595-3764038 bp Ori: AOY77508.1 Feature: domain Description: ManC Location: 3763667-3764018 bp Feature: domain Description: ManC Location: 3763667-376401 8 bp Feature: gene Location: 3764212-3765594 bp Feature: gene Location: 4016344-4016668 bp Feature: domain Description: COG2361 Location: 4016350-4016470 bp Feature: domain Description: COG2361 Location: 401 6350-401 6470 bp Feature: gene Location: 4016665-4016955 bp Ori: AOY77717.1 Feature: domain Description: COG1669 Location: 4016668-4016953 bp Feature: domain Description: COG1 669 Location: 401 6668-401 6953 bp Feature: gene Location: 4017163-4018491 bp Ori: AOY77718.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4017469-4018138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 7469-401 81 38 bp Feature: gene Location: 4019114-4019938 bp Ori: AOY77719.1 Feature: domain Description: Creatininase Location: 4019150-4019918 bp Feature: domain Description: Creatininase Location: 401 91 50-401 991 8 bp Feature: gene Location: 4020287-4020928 bp Ori: AOY77720.1 Feature: domain Description: LUD_dom Location: 4020326-4020908 bp Feature: domain Description: LUD_dom Location: 4020326-4020908 bp Feature: gene Location: 4021176-4022503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021482-4022151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021 482-40221 51 bp Feature: gene Location: 4023190-4023579 bp Ori: AOY77721.1 Feature: domain Description: Asp_protease_2 Location: 4023262-4023508 bp Feature: domain Description: Asp_protease_2 Location: 4023262-4023508 bp Feature: gene Location: 4023581-4023823 bp Feature: gene Location: 4024159-4024599 bp Ori: AOY77723.1 Feature: domain Description: PTZ00330 Location: 4024165-4024573 bp Feature: domain Description: PTZ00330 Location: 40241 65-4024573 bp Feature: gene Location: 4024839-4026185 bp Ori: AOY77724.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4025145-4025814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40251 45-402581 4 bp Feature: domain Description: GIIM Note: maturase Location: 4025892-4026099 bp Feature: domain Description: GIIM Note: maturase Location: 4025892-4026099 bp Feature: gene Location: 4026935-4027459 bp Feature: gene Location: 4027711-4028775 bp Ori: AOY77726.1 Feature: domain Description: integrase_gron Location: 4027954-4028473 bp Feature: domain Description: integrase_gron Location: 4027954-4028473 bp Feature: domain Description: integrase_gron Location: 4028527-4028764 bp Feature: domain Description: integrase_gron Location: 4028527-4028764 bp Feature: gene Location: 4183352-4184206 bp Ori: AOY77849.1 Feature: domain Description: Methyltransf_25 Location: 4183562-4183844 bp Feature: domain Description: Methyltransf_25 Location: 41 83562-41 83844 bp Feature: gene Location: 4184804-4185319 bp Ori: AOY77850.1 Feature: domain Description: Acetyltransf_1 Location: 4184918-4185224 bp Feature: domain Description: Acetyltransf_1 Location: 41 8491 8-41 85224 bp Feature: gene Location: 4185498-4186843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185804-4186473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 85804-41 86473 bp Feature: gene Location: 4187430-4187858 bp Ori: AOY77851.1 Feature: domain Description: DUF2992 Location: 4187460-4187856 bp Feature: domain Description: DUF2992 Location: 41 87460-41 87856 bp Feature: gene Location: 4188049-4188480 bp Feature: gene Location: 4215994-4216962 bp Ori: AOY78470.1 Feature: domain Description: Cation_efflux Location: 4216045-4216672 bp Feature: domain Description: Cation_efflux Location: 421 6045-421 6672 bp Feature: gene Location: 4217290-4218030 bp Ori: AOY78471.1 Feature: domain Description: Y1_Tnp Location: 4217332-4217659 bp Feature: domain Description: Y1 _Tnp Location: 421 7332-421 7659 bp Feature: gene Location: 4218433-4219452 bp Ori: AOY77880.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4218649-4219210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 421 8649-421 921 0 bp Feature: gene Location: 4219718-4220062 bp Feature: gene Location: 4220065-4221003 bp Ori: AOY77882.1 Feature: domain Description: PRTase_2 Location: 4220449-4220650 bp Feature: domain Description: PRTase_2 Location: 4220449-4220650 bp Sorry, your browser does not 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Associated domains:myRT dnaE (PRK07374), McrA (COG4058), RVT-GII, DUF1638 (pfam07796), RVT-UG3, RVT-UG8, SPOUT_MTase (pfam02590), InsQ (COG0675), PRK06526 (transposase; Provisional), HTH_23 (pfam13384)
COG4584 (Transposase ), GIIM (pfam08388), Calci_bind_CcbP (pfam11535), yugu (LOAD_yugu), LysM (smart00257), RtcB (pfam01139), Intron_maturas2 (pfam01348), HNHc (smart00507), Peptidase_M56 (pfam05569), Amidase_2 (pfam01510)
XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781), RNase_Y (TIGR03319), recA (PRK09519), RVT_N (pfam13655), BaeS (COG0642), ProX_deacylase (cd04333), ManC (COG0662)
COG2361 (Uncharacterized conserved protein, contains HEPN domain ), COG1669 (Predicted nucleotidyltransferase ), Creatininase (pfam02633), LUD_dom (pfam02589), Asp_protease_2 (pfam13650), PTZ00330 (acetyltransferase; Provisional), integrase_gron (TIGR02249), Methyltransf_25 (pfam13649), Acetyltransf_1 (pfam00583), DUF2992 (pfam11208)
Cation_efflux (pfam01545), Y1_Tnp (pfam01797), RVT-Retrons, PRTase_2 (pfam15609)