myRT

myRT report for GCA_001854285.1_ASM185428v1

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Seq: CP017751.1 Cupriavidus sp. USMAHM13 chromosome 1, complete sequence (4181780 bp)
Overview 1 RT 1: 3750311-3756065 bp 2 RT 2: 4019759-4025342 bp Neighborhood of RT #1 [3750311, 3756073] ispH SlpA RVT_N RVT-GII GIIM HNHc PRK00024 RpmB Neighborhood of RT #2 [4019759, 4025342] Peptidases_S8_Subtilisin_like_2 RVT-Retrons Hns Feature: gene Location: 3750311-3751270 bp Ori: AOZ00674.1 Feature: domain Description: ispH Location: 3750344-3751229 bp Feature: domain Description: ispH Location: 3750344-3751 229 bp Feature: gene Location: 3751343-3751834 bp Ori: AOZ00675.1 Feature: domain Description: SlpA Location: 3751403-3751829 bp Feature: domain Description: SlpA Location: 3751 403-3751 829 bp Feature: gene Location: 3751932-3753647 bp Ori: AOZ00676.1 Feature: domain Description: RVT_N Location: 3751989-3752232 bp Feature: domain Description: RVT_N Location: 3751 989-3752232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3752277-3752925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3752277-3752925 bp Feature: domain Description: GIIM Note: maturase Location: 3752979-3753210 bp Feature: domain Description: GIIM Note: maturase Location: 3752979-375321 0 bp Feature: domain Description: HNHc Note: nucleases Location: 3753429-3753594 bp Feature: domain Description: HNHc Note: nucleases Location: 3753429-3753594 bp Feature: gene Location: 3754920-3755594 bp Ori: AOZ00677.1 Feature: domain Description: PRK00024 Location: 3754923-3755589 bp Feature: domain Description: PRK00024 Location: 3754923-3755589 bp Feature: gene Location: 3755840-3756073 bp Ori: AOZ00678.1 Feature: domain Description: RpmB Location: 3755843-3756065 bp Feature: domain Description: RpmB Location: 3755843-3756065 bp Feature: gene Location: 4019759-4021930 bp Ori: AOZ00889.1 Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 4020374-4021277 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 4020374-4021 277 bp Feature: gene Location: 4022506-4022733 bp Feature: gene Location: 4023055-4024026 bp Ori: AOZ00891.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4023193-4023754 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40231 93-4023754 bp Feature: gene Location: 4024334-4024573 bp Ori: AOZ01407.1 Feature: domain Description: Hns Location: 4024376-4024568 bp Feature: domain Description: Hns Location: 4024376-4024568 bp Feature: gene Location: 4025037-4025342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispH (PRK01045), SlpA (COG1047), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC), RpmB (COG0227), Peptidases_S8_Subtilisin_like_2 (cd04847), RVT-Retrons
Hns (COG2916)