myRT

myRT report for GCA_001854325.1_ASM185432v1

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Seq: CP017754.1 Cupriavidus sp. USMAA1020 chromosome 1, complete sequence (4383984 bp)
Overview 1 RT 1: 2016312-2020688 bp Neighborhood of RT #1 [2016312, 2021299] PAAR_CT_2 COG4253 SRAP RVT-Retrons Trypsin_2 HTH_XRE T5orf172 Feature: gene Location: 2016312-2016833 bp Ori: AOZ05933.1 Feature: domain Description: PAAR_CT_2 Location: 2016324-2016555 bp Feature: domain Description: PAAR_CT_2 Location: 201 6324-201 6555 bp Feature: domain Description: COG4253 Location: 2016621-2016777 bp Feature: domain Description: COG4253 Location: 201 6621 -201 6777 bp Feature: gene Location: 2017013-2017711 bp Ori: AOZ05934.1 Feature: domain Description: SRAP Location: 2017016-2017688 bp Feature: domain Description: SRAP Location: 201 701 6-201 7688 bp Feature: gene Location: 2017756-2019684 bp Ori: AOZ05935.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2017930-2018536 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 201 7930-201 8536 bp Feature: domain Description: Trypsin_2 Location: 2019010-2019493 bp Feature: domain Description: Trypsin_2 Location: 201 901 0-201 9493 bp Feature: gene Location: 2019870-2020205 bp Ori: AOZ05936.1 Feature: domain Description: HTH_XRE Location: 2019888-2020059 bp Feature: domain Description: HTH_XRE Location: 201 9888-2020059 bp Feature: gene Location: 2020427-2021299 bp Ori: AOZ05937.1 Feature: domain Description: T5orf172 Location: 2020436-2020688 bp Feature: domain Description: T5orf1 72 Location: 2020436-2020688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_CT_2 (cd14744), COG4253 (Uncharacterized conserved protein, DUF2345 family ), SRAP (pfam02586), RVT-Retrons, Trypsin_2 (pfam13365), HTH_XRE (smart00530), T5orf172 (smart00974)