myRT

myRT report for GCA_001860505.1_ASM186050v1

Download annotations/find similar RTs

Seq: CP013483.1 Escherichia coli strain Y5, complete genome (4839266 bp)
Overview 1 RT 1: 1231213-1237604 bp 2 RT 2: 4582203-4587728 bp 3 RT 3: 4821431-4831977 bp Neighborhood of RT #1 [1231213, 1237630] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #2 [4582203, 4587835] InsE PHA02517 RVT-Retrons PRK09678 Neighborhood of RT #3 [4821431, 4832003] DUF1837 BRR2 BRR2 RVT-UG8 RVT-UG3 COG4688 COG4688 Feature: gene Location: 1231213-1232268 bp Ori: APA24998.1 Feature: domain Description: YesN Location: 1231216-1231606 bp Feature: domain Description: YesN Location: 1 231 21 6-1 231 606 bp Feature: domain Description: YesN Location: 1231948-1232245 bp Feature: domain Description: YesN Location: 1 231 948-1 232245 bp Feature: gene Location: 1232285-1233514 bp Ori: APA24999.1 Feature: domain Description: YesM Location: 1232765-1233506 bp Feature: domain Description: YesM Location: 1 232765-1 233506 bp Feature: gene Location: 1234097-1234618 bp Ori: APA25000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1234103-1234385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2341 03-1 234385 bp Feature: domain Description: GIIM Note: maturase Location: 1234433-1234613 bp Feature: domain Description: GIIM Note: maturase Location: 1 234433-1 23461 3 bp Feature: gene Location: 1234646-1235185 bp Ori: APA25001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1234976-1235054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 234976-1 235054 bp Feature: gene Location: 1235671-1236576 bp Feature: gene Location: 1236713-1237630 bp Ori: APA25003.1 Feature: domain Description: PFLE_PFLC Location: 1236749-1237604 bp Feature: domain Description: PFLE_PFLC Location: 1 236749-1 237604 bp Feature: gene Location: 4582203-4582529 bp Ori: APA27991.1 Feature: domain Description: InsE Location: 4582206-4582527 bp Feature: domain Description: InsE Location: 4582206-4582527 bp Feature: gene Location: 4582529-4583416 bp Ori: APA27992.1 Feature: domain Description: PHA02517 Location: 4582589-4583414 bp Feature: domain Description: PHA0251 7 Location: 4582589-458341 4 bp Feature: gene Location: 4585015-4585947 bp Ori: APA27993.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4585117-4585711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45851 1 7-458571 1 bp Feature: gene Location: 4585949-4586917 bp Feature: gene Location: 4587563-4587835 bp Ori: APA27995.1 Feature: domain Description: PRK09678 Location: 4587572-4587728 bp Feature: domain Description: PRK09678 Location: 4587572-4587728 bp Feature: gene Location: 4821431-4822249 bp Ori: APA28212.1 Feature: domain Description: DUF1837 Location: 4821659-4822130 bp Feature: domain Description: DUF1 837 Location: 4821 659-48221 30 bp Feature: gene Location: 4822239-4825394 bp Ori: APA28213.1 Feature: domain Description: BRR2 Location: 4822962-4823538 bp Feature: domain Description: BRR2 Location: 4822962-4823538 bp Feature: domain Description: BRR2 Location: 4823973-4824219 bp Feature: domain Description: BRR2 Location: 4823973-482421 9 bp Feature: gene Location: 4826122-4828164 bp Ori: APA28214.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4826734-4827181 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4826734-48271 81 bp Feature: gene Location: 4828157-4829506 bp Ori: APA28215.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4828613-4829090 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 482861 3-4829090 bp Feature: gene Location: 4829558-4829977 bp Feature: gene Location: 4829970-4832003 bp Ori: APA28217.1 Feature: domain Description: COG4688 Location: 4829973-4830879 bp Feature: domain Description: COG4688 Location: 4829973-4830879 bp Feature: domain Description: COG4688 Location: 4831254-4831977 bp Feature: domain Description: COG4688 Location: 4831 254-4831 977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), DUF1837 (pfam08878)
BRR2 (COG1204), RVT-UG8, RVT-UG3, COG4688 (Uncharacterized protein )