myRT

myRT report for GCA_001865855.1_ASM186585v1

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Seq: CP017839.1 Nocardia seriolae strain EM150506, complete genome (8304518 bp)
Overview 1 RT 1: 1966067-1973874 bp 2 RT 2: 2086059-2090659 bp 3 RT 3: 2366009-2370463 bp 4 RT 4: 2382047-2385658 bp 5 RT 5: 2701396-2708384 bp 6 RT 6: 4010877-4015348 bp 7 RT 7: 4773535-4778202 bp 8 RT 8: 6908636-6914465 bp Neighborhood of RT #1 [1966067, 1973897] DDE_5 RVT-GII GIIM HTH_31 PRK09601 Neighborhood of RT #2 [2086059, 2090659] DDE_5 DDE_5 RVT-GII Neighborhood of RT #3 [2366009, 2370906] DUF4096 RVT-GII Intron_maturas2 HNHc DDE_5 Neighborhood of RT #4 [2382047, 2386011] Tra8 Tra8 Tra8 PHA02517 RVT-GII YkfC Tra5 Neighborhood of RT #5 [2701396, 2708395] YdcF-like MngR RVT-GII GIIM CaiA ACAD Neighborhood of RT #6 [4010877, 4015371] DUF4241 DDE_5 RVT-GII COG3393 Neighborhood of RT #7 [4773535, 4778202] InsE PHA02517 RVT-GII GIIM DDE_5 Neighborhood of RT #8 [6908636, 6914482] DDE_5 RVT-GII AcrR SDR_c Feature: gene Location: 1966067-1967161 bp Ori: APA95926.1 Feature: domain Description: DDE_5 Location: 1966091-1966718 bp Feature: domain Description: DDE_5 Location: 1 966091 -1 96671 8 bp Feature: gene Location: 1967544-1968233 bp Feature: gene Location: 1968363-1969850 bp Ori: APA95928.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1968678-1969386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 968678-1 969386 bp Feature: domain Description: GIIM Note: maturase Location: 1969461-1969692 bp Feature: domain Description: GIIM Note: maturase Location: 1 969461 -1 969692 bp Feature: gene Location: 1970685-1971893 bp Ori: APA95929.1 Feature: domain Description: HTH_31 Location: 1970706-1970886 bp Feature: domain Description: HTH_31 Location: 1 970706-1 970886 bp Feature: gene Location: 1972797-1973897 bp Ori: APA95930.1 Feature: domain Description: PRK09601 Location: 1972803-1973874 bp Feature: domain Description: PRK09601 Location: 1 972803-1 973874 bp Feature: gene Location: 2086059-2087276 bp Ori: APA96040.1 Feature: domain Description: DDE_5 Location: 2086152-2086770 bp Feature: domain Description: DDE_5 Location: 20861 52-2086770 bp Feature: gene Location: 2087277-2088707 bp Ori: APA96041.1 Feature: domain Description: DDE_5 Location: 2087325-2087946 bp Feature: domain Description: DDE_5 Location: 2087325-2087946 bp Feature: gene Location: 2088745-2089386 bp Ori: APA96042.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089060-2089357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089060-2089357 bp Feature: gene Location: 2090006-2090401 bp Feature: gene Location: 2090480-2090659 bp Feature: gene Location: 2366009-2366383 bp Feature: gene Location: 2366454-2366816 bp Ori: APA96289.1 Feature: domain Description: DUF4096 Location: 2366487-2366715 bp Feature: domain Description: DUF4096 Location: 2366487-236671 5 bp Feature: gene Location: 2367684-2369468 bp Ori: APA96290.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2367945-2368743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2367945-2368743 bp Feature: domain Description: Intron_maturas2 Location: 2368860-2369073 bp Feature: domain Description: Intron_maturas2 Location: 2368860-2369073 bp Feature: domain Description: HNHc Note: nucleases Location: 2369268-2369424 bp Feature: domain Description: HNHc Note: nucleases Location: 2369268-2369424 bp Feature: gene Location: 2369485-2369715 bp Feature: gene Location: 2369812-2370906 bp Ori: APA96292.1 Feature: domain Description: DDE_5 Location: 2369836-2370463 bp Feature: domain Description: DDE_5 Location: 2369836-2370463 bp Feature: gene Location: 2382047-2383360 bp Ori: APA96305.1 Feature: domain Description: Tra8 Location: 2382200-2382461 bp Feature: domain Description: Tra8 Location: 2382200-2382461 bp Feature: domain Description: Tra8 Location: 2382560-2382926 bp Feature: domain Description: Tra8 Location: 2382560-2382926 bp Feature: domain Description: Tra8 Location: 2382992-2383325 bp Feature: domain Description: Tra8 Location: 2382992-2383325 bp Feature: gene Location: 2383537-2383782 bp Ori: APA96306.1 Feature: domain Description: PHA02517 Location: 2383546-2383750 bp Feature: domain Description: PHA0251 7 Location: 2383546-2383750 bp Feature: gene Location: 2383792-2384352 bp Ori: APA96307.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383840-2384296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383840-2384296 bp Feature: gene Location: 2384349-2384633 bp Ori: APA96308.1 Feature: domain Description: YkfC Location: 2384412-2384571 bp Feature: domain Description: YkfC Location: 238441 2-2384571 bp Feature: gene Location: 2385247-2386011 bp Ori: APA96309.1 Feature: domain Description: Tra5 Location: 2385253-2385658 bp Feature: domain Description: Tra5 Location: 2385253-2385658 bp Feature: gene Location: 2701396-2702064 bp Ori: APA96592.1 Feature: domain Description: YdcF-like Location: 2701495-2701858 bp Feature: domain Description: YdcF-like Location: 2701 495-2701 858 bp Feature: gene Location: 2702076-2702840 bp Ori: APA96593.1 Feature: domain Description: MngR Location: 2702085-2702820 bp Feature: domain Description: MngR Location: 2702085-2702820 bp Feature: gene Location: 2703756-2705243 bp Ori: APA96594.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2704071-2704779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2704071 -2704779 bp Feature: domain Description: GIIM Note: maturase Location: 2704854-2705085 bp Feature: domain Description: GIIM Note: maturase Location: 2704854-2705085 bp Feature: gene Location: 2705703-2706941 bp Ori: APA96595.1 Feature: domain Description: CaiA Location: 2705721-2706927 bp Feature: domain Description: CaiA Location: 2705721 -2706927 bp Feature: gene Location: 2706968-2708395 bp Ori: APA96596.1 Feature: domain Description: ACAD Location: 2707316-2708384 bp Feature: domain Description: ACAD Location: 270731 6-2708384 bp Feature: gene Location: 4010877-4011473 bp Ori: APA97812.1 Feature: domain Description: DUF4241 Location: 4010925-4011441 bp Feature: domain Description: DUF4241 Location: 401 0925-401 1 441 bp Feature: gene Location: 4012175-4013269 bp Ori: APA97813.1 Feature: domain Description: DDE_5 Location: 4012199-4012826 bp Feature: domain Description: DDE_5 Location: 401 21 99-401 2826 bp Feature: gene Location: 4013281-4013583 bp Ori: APA97814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4013305-4013455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 3305-401 3455 bp Feature: gene Location: 4014094-4014399 bp Feature: gene Location: 4014535-4015371 bp Ori: APA97816.1 Feature: domain Description: COG3393 Location: 4014967-4015348 bp Feature: domain Description: COG3393 Location: 401 4967-401 5348 bp Feature: gene Location: 4773535-4773858 bp Ori: APA98572.1 Feature: domain Description: InsE Location: 4773538-4773844 bp Feature: domain Description: InsE Location: 4773538-4773844 bp Feature: gene Location: 4773858-4774784 bp Ori: APA98573.1 Feature: domain Description: PHA02517 Location: 4773957-4774767 bp Feature: domain Description: PHA0251 7 Location: 4773957-4774767 bp Feature: gene Location: 4774858-4776066 bp Ori: APA98574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4775071-4775779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4775071 -4775779 bp Feature: domain Description: GIIM Note: maturase Location: 4775854-4775995 bp Feature: domain Description: GIIM Note: maturase Location: 4775854-4775995 bp Feature: gene Location: 4776156-4777484 bp Ori: APA98575.1 Feature: domain Description: DDE_5 Location: 4776210-4776894 bp Feature: domain Description: DDE_5 Location: 477621 0-4776894 bp Feature: gene Location: 4777885-4778202 bp Feature: gene Location: 6908636-6909166 bp Feature: gene Location: 6910052-6911380 bp Ori: APB00624.1 Feature: domain Description: DDE_5 Location: 6910106-6910790 bp Feature: domain Description: DDE_5 Location: 691 01 06-691 0790 bp Feature: gene Location: 6911312-6912355 bp Ori: APB00625.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6911627-6912272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691 1 627-691 2272 bp Feature: gene Location: 6912774-6913586 bp Ori: APB00626.1 Feature: domain Description: AcrR Location: 6912819-6913386 bp Feature: domain Description: AcrR Location: 691 281 9-691 3386 bp Feature: gene Location: 6913712-6914482 bp Ori: APB00627.1 Feature: domain Description: SDR_c Location: 6913739-6914465 bp Feature: domain Description: SDR_c Location: 691 3739-691 4465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), HTH_31 (pfam13560), PRK09601 (redox-regulated ATPase YchF), DUF4096 (pfam13340), Intron_maturas2 (pfam01348), HNHc (smart00507), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed)
YkfC (COG3344), Tra5 (COG2801), YdcF-like (cl00630), MngR (COG2188), CaiA (COG1960), ACAD (cl09933), DUF4241 (pfam14025), COG3393 (Predicted acetyltransferase, GNAT family ), InsE (COG2963), AcrR (COG1309)
SDR_c (cd05233)