myRT

myRT report for GCA_001874485.1_ASM187448v1

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Seq: CP015086.1 Escherichia coli O25b:H4 plasmid, complete sequence (130920 bp)
Overview 1 RT 1: 58751-62722 bp Neighborhood of RT #1 [58751, 62727] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 58751-59086 bp Feature: gene Location: 58999-59205 bp Feature: gene Location: 59883-61784 bp Ori: ANK07051.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60150-60981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601 50-60981 bp Feature: domain Description: Intron_maturas2 Location: 61095-61353 bp Feature: domain Description: Intron_maturas2 Location: 61 095-61 353 bp Feature: domain Description: HNHc Note: nucleases Location: 61527-61689 bp Feature: domain Description: HNHc Note: nucleases Location: 61 527-61 689 bp Feature: gene Location: 61979-62431 bp Ori: ANK07052.1 Feature: domain Description: PRK13732 Location: 61982-62429 bp Feature: domain Description: PRK1 3732 Location: 61 982-62429 bp Feature: gene Location: 62443-62727 bp Ori: ANK07053.1 Feature: domain Description: DUF905 Location: 62524-62722 bp Feature: domain Description: DUF905 Location: 62524-62722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP015085.1 Escherichia coli O25b:H4 chromosome, complete genome (5289898 bp)
Overview 1 RT 1: 3204987-3212149 bp 2 RT 2: 5146233-5153096 bp Neighborhood of RT #1 [3204987, 3212235] phage_tail_N 7tmA_amine_R-like Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 PRK10597 INT_Rci_Hp1_C Neighborhood of RT #2 [5146233, 5153096] PRK11388 RVT-Retrons Feature: gene Location: 3204987-3208010 bp Ori: ANK04663.1 Feature: domain Description: phage_tail_N Location: 3204990-3205389 bp Feature: domain Description: phage_tail_N Location: 32 04990-32 05389 bp Feature: domain Description: 7tmA_amine_R-like Location: 3205896-3206316 bp Feature: domain Description: 7tmA_amine_R-like Location: 32 05896-32 06316 bp Feature: domain Description: Phage_fiber_2 Location: 3206373-3206493 bp Feature: domain Description: Phage_fiber_2 Location: 32 06373-32 06493 bp Feature: domain Description: Phage_fiber_2 Location: 3206505-3206625 bp Feature: domain Description: Phage_fiber_2 Location: 32 06505-32 0662 5 bp Feature: domain Description: Collar Location: 3207381-3207519 bp Feature: domain Description: Collar Location: 32 07381-32 07519 bp Feature: domain Description: Phage_fiber Location: 3207570-3207609 bp Feature: domain Description: Phage_fiber Location: 32 07570-32 07609 bp Feature: domain Description: Phage_fiber Location: 3207666-3207705 bp Feature: domain Description: Phage_fiber Location: 32 07666-32 07705 bp Feature: domain Description: Phage_fiber Location: 3207813-3207852 bp Feature: domain Description: Phage_fiber Location: 32 07813-32 07852 bp Feature: domain Description: Phage_fiber Location: 3207858-3207891 bp Feature: domain Description: Phage_fiber Location: 32 07858-32 07891 bp Feature: gene Location: 3208010-3208594 bp Ori: ANK04664.1 Feature: domain Description: Caudo_TAP Location: 3208226-3208583 bp Feature: domain Description: Caudo_TAP Location: 32 082 2 6-32 08583 bp Feature: gene Location: 3208707-3210083 bp Ori: ANK04665.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3208941-3209547 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 32 08941-32 09547 bp Feature: gene Location: 3210829-3211077 bp Ori: ANK04666.1 Feature: domain Description: PRK10597 Location: 3210832-3211072 bp Feature: domain Description: PRK10597 Location: 32 10832 -32 11072 bp Feature: gene Location: 3211138-3212235 bp Ori: ANK04667.1 Feature: domain Description: INT_Rci_Hp1_C Location: 3211678-3212149 bp Feature: domain Description: INT_Rci_Hp1_C Location: 32 11678-32 12 149 bp Feature: gene Location: 5146233-5148161 bp Ori: ANK06784.1 Feature: domain Description: PRK11388 Location: 5146245-5148153 bp Feature: domain Description: PRK11388 Location: 51462 45-5148153 bp Feature: gene Location: 5148198-5148428 bp Feature: gene Location: 5149438-5151210 bp Ori: ANK06786.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5149597-5150215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5149597-51502 15 bp Feature: gene Location: 5151445-5152584 bp Feature: gene Location: 5152590-5153096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional), INT_Rci_Hp1_C (cd00796), PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)
RVT-Retrons