myRT

myRT report for GCA_001874645.1_ASM187464v1

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Seq: CP017886.1 Pseudomonas frederiksbergensis strain ERDD5:01 chromosome, complete genome (5747498 bp)
Overview 1 RT 1: 359404-364903 bp 2 RT 2: 3952135-3959982 bp 3 RT 3: 4337546-4346466 bp Neighborhood of RT #1 [359404, 364903] AhpC PRK06116 RVT-GII GIIM galU Neighborhood of RT #2 [3952135, 3959982] PRK11139 RaiA RVT-GII GIIM hydroxyacyl-CoA-like_DH_SDR_c-like Neighborhood of RT #3 [4337546, 4346474] Phosphoesterase KOG1546 HNHc RVT-GII GIIM PRK07209 DUF2790 Feature: gene Location: 359404-359967 bp Ori: APC14476.1 Feature: domain Description: AhpC Location: 359407-359965 bp Feature: domain Description: AhpC Location: 359407-359965 bp Feature: gene Location: 360211-361569 bp Ori: APC14477.1 Feature: domain Description: PRK06116 Location: 360214-361552 bp Feature: domain Description: PRK061 1 6 Location: 36021 4-361 552 bp Feature: gene Location: 361718-363139 bp Ori: APC14478.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362075-362690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362075-362690 bp Feature: domain Description: GIIM Note: maturase Location: 362744-362960 bp Feature: domain Description: GIIM Note: maturase Location: 362744-362960 bp Feature: gene Location: 363620-364459 bp Ori: APC14479.1 Feature: domain Description: galU Location: 363629-364412 bp Feature: domain Description: galU Location: 363629-36441 2 bp Feature: gene Location: 364715-364903 bp Feature: gene Location: 3952135-3953082 bp Ori: APC17642.1 Feature: domain Description: PRK11139 Location: 3952174-3953041 bp Feature: domain Description: PRK1 1 1 39 Location: 39521 74-3953041 bp Feature: gene Location: 3953296-3953703 bp Ori: APC17643.1 Feature: domain Description: RaiA Location: 3953317-3953587 bp Feature: domain Description: RaiA Location: 395331 7-3953587 bp Feature: gene Location: 3954193-3955614 bp Ori: APC17644.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3954550-3955165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3954550-39551 65 bp Feature: domain Description: GIIM Note: maturase Location: 3955219-3955435 bp Feature: domain Description: GIIM Note: maturase Location: 395521 9-3955435 bp Feature: gene Location: 3955844-3956755 bp Ori: APC17645.1 Feature: domain Description: hydroxyacyl-CoA-like_DH_SDR_c-like Location: 3955862-3956606 bp Feature: domain Description: hydroxyacyl-CoA-like_DH_SDR_c-like Location: 3955862-3956606 bp Feature: gene Location: 3957508-3959982 bp Feature: gene Location: 4337546-4341049 bp Ori: APC17974.1 Feature: domain Description: Phosphoesterase Location: 4337573-4338767 bp Feature: domain Description: Phosphoesterase Location: 4337573-4338767 bp Feature: domain Description: KOG1546 Location: 4340060-4340963 bp Feature: domain Description: KOG1 546 Location: 4340060-4340963 bp Feature: gene Location: 4341320-4342036 bp Ori: APC17975.1 Feature: domain Description: HNHc Note: nucleases Location: 4341785-4341959 bp Feature: domain Description: HNHc Note: nucleases Location: 4341 785-4341 959 bp Feature: gene Location: 4342754-4344175 bp Ori: APC17976.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4343111-4343726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43431 1 1 -4343726 bp Feature: domain Description: GIIM Note: maturase Location: 4343780-4343996 bp Feature: domain Description: GIIM Note: maturase Location: 4343780-4343996 bp Feature: gene Location: 4344299-4345546 bp Ori: APC17977.1 Feature: domain Description: PRK07209 Location: 4344302-4345544 bp Feature: domain Description: PRK07209 Location: 4344302-4345544 bp Feature: gene Location: 4346211-4346474 bp Ori: APC17978.1 Feature: domain Description: DUF2790 Location: 4346235-4346466 bp Feature: domain Description: DUF2790 Location: 4346235-4346466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AhpC (TIGR03137), PRK06116 (glutathione reductase; Validated), RVT-GII, GIIM (pfam08388), galU (TIGR01099), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), RaiA (COG1544), hydroxyacyl-CoA-like_DH_SDR_c-like (cd05353), Phosphoesterase (pfam04185), KOG1546 (KOG1546, Metacaspase involved in regulation of apoptosis )
HNHc (smart00507), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), DUF2790 (pfam10976)

Seq: CP017887.1 Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence (371069 bp)
Overview 1 RT 1: 169334-174817 bp 2 RT 2: 357307-362188 bp Neighborhood of RT #1 [169334, 174846] RVT_N RVT-GII GIIM DDE_Tnp_IS66 Phage_int_SAM_1 INT_RitA_C_like Neighborhood of RT #2 [357307, 362202] HpaH HpaI RVT-GII RVT-GII GIIM InsE Feature: gene Location: 169334-170020 bp Feature: gene Location: 170127-170570 bp Feature: gene Location: 170859-172520 bp Ori: APC19516.1 Feature: domain Description: RVT_N Location: 170904-171147 bp Feature: domain Description: RVT_N Location: 170904-171147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171192-171828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171192 -17182 8 bp Feature: domain Description: GIIM Note: maturase Location: 171882-172113 bp Feature: domain Description: GIIM Note: maturase Location: 171882 -172 113 bp Feature: gene Location: 172966-173421 bp Ori: APC19517.1 Feature: domain Description: DDE_Tnp_IS66 Location: 172969-173290 bp Feature: domain Description: DDE_Tnp_IS66 Location: 172 969-1732 90 bp Feature: gene Location: 173623-174846 bp Ori: APC19518.1 Feature: domain Description: Phage_int_SAM_1 Location: 173971-174214 bp Feature: domain Description: Phage_int_SAM_1 Location: 173971-1742 14 bp Feature: domain Description: INT_RitA_C_like Location: 174292-174817 bp Feature: domain Description: INT_RitA_C_like Location: 1742 92 -174817 bp Feature: gene Location: 357307-358110 bp Ori: APC19641.1 Feature: domain Description: HpaH Location: 357310-358108 bp Feature: domain Description: HpaH Location: 357310-358108 bp Feature: gene Location: 358170-358973 bp Ori: APC19642.1 Feature: domain Description: HpaI Location: 358188-358932 bp Feature: domain Description: HpaI Location: 358188-358932 bp Feature: gene Location: 359220-359932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359223-359526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3592 2 3-35952 6 bp Feature: gene Location: 359925-360888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359934-360198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359934-360198 bp Feature: domain Description: GIIM Note: maturase Location: 360252-360483 bp Feature: domain Description: GIIM Note: maturase Location: 3602 52 -360483 bp Feature: gene Location: 361653-361925 bp Feature: gene Location: 361894-362202 bp Ori: APC19644.1 Feature: domain Description: InsE Location: 361897-362188 bp Feature: domain Description: InsE Location: 361897-362 188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), HpaH (TIGR02312), HpaI (TIGR02311), InsE (COG2963)