myRT

myRT report for GCA_001879605.1_ASM187960v1

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Seq: CP013246.1 Clostridium botulinum strain CDC_69094, complete genome (4089027 bp)
Overview 1 RT 1: 114496-118751 bp 2 RT 2: 212165-218270 bp 3 RT 3: 848642-855250 bp 4 RT 4: 861440-867286 bp 5 RT 5: 3449314-3454596 bp Neighborhood of RT #1 [114496, 118751] DUF1836 HD_3 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [212165, 218380] XtmB Phage_prot_Gp6 RVT_N RVT-GII GIIM HNHc Phage_prot_Gp6 phageSPP1_gp7 Neighborhood of RT #3 [848642, 855255] tgl RVT_N RVT-GII GIIM HNHc DUF3862 Neighborhood of RT #4 [861440, 867450] GIY-YIG_LuxR_like RVT-GII GIIM McrA RVT_N RVT-GII PcnB YcgL Neighborhood of RT #5 [3449314, 3454619] RVT_N RVT-GII GIIM HNHc TIGR02271 YsnF Feature: gene Location: 114496-115092 bp Ori: APC81237.1 Feature: domain Description: DUF1836 Location: 114562-114883 bp Feature: domain Description: DUF1 836 Location: 1 1 4562-1 1 4883 bp Feature: gene Location: 115461-116021 bp Ori: APC79139.1 Feature: domain Description: HD_3 Location: 115500-115974 bp Feature: domain Description: HD_3 Location: 1 1 5500-1 1 5974 bp Feature: gene Location: 116575-117783 bp Ori: APC81427.1 Gene: ltrA Feature: domain Description: RVT_N Location: 116632-116869 bp Feature: domain Description: RVT_N Location: 1 1 6632-1 1 6869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116932-117586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6932-1 1 7586 bp Feature: domain Description: GIIM Note: maturase Location: 117649-117769 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 7649-1 1 7769 bp Feature: gene Location: 117950-118396 bp Ori: APC79005.1 Feature: domain Description: HNHc Note: nucleases Location: 118085-118250 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 8085-1 1 8250 bp Feature: gene Location: 118536-118751 bp Feature: gene Location: 212165-213403 bp Ori: APC80475.1 Feature: domain Description: XtmB Location: 212195-213374 bp Feature: domain Description: XtmB Location: 21 21 95-21 3374 bp Feature: gene Location: 213416-214666 bp Ori: APC78743.1 Feature: domain Description: Phage_prot_Gp6 Location: 213506-214571 bp Feature: domain Description: Phage_prot_Gp6 Location: 21 3506-21 4571 bp Feature: gene Location: 214658-216484 bp Ori: APC79200.1 Gene: ltrA Feature: domain Description: RVT_N Location: 214715-214952 bp Feature: domain Description: RVT_N Location: 21 471 5-21 4952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215015-215669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 501 5-21 5669 bp Feature: domain Description: GIIM Note: maturase Location: 215732-215966 bp Feature: domain Description: GIIM Note: maturase Location: 21 5732-21 5966 bp Feature: domain Description: HNHc Note: nucleases Location: 216173-216338 bp Feature: domain Description: HNHc Note: nucleases Location: 21 61 73-21 6338 bp Feature: gene Location: 217084-217368 bp Ori: APC81731.1 Feature: domain Description: Phage_prot_Gp6 Location: 217105-217300 bp Feature: domain Description: Phage_prot_Gp6 Location: 21 71 05-21 7300 bp Feature: gene Location: 217358-218380 bp Ori: APC80062.1 Feature: domain Description: phageSPP1_gp7 Location: 217949-218270 bp Feature: domain Description: phageSPP1 _gp7 Location: 21 7949-21 8270 bp Feature: gene Location: 848642-849463 bp Ori: APC78527.1 Feature: domain Description: tgl Location: 848645-849443 bp Feature: domain Description: tgl Location: 848645-849443 bp Feature: gene Location: 849460-850455 bp Feature: gene Location: 851149-852975 bp Ori: APC82101.1 Gene: ltrA Feature: domain Description: RVT_N Location: 851206-851443 bp Feature: domain Description: RVT_N Location: 851 206-851 443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851506-852160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851 506-8521 60 bp Feature: domain Description: GIIM Note: maturase Location: 852223-852457 bp Feature: domain Description: GIIM Note: maturase Location: 852223-852457 bp Feature: domain Description: HNHc Note: nucleases Location: 852664-852829 bp Feature: domain Description: HNHc Note: nucleases Location: 852664-852829 bp Feature: gene Location: 853680-853979 bp Feature: gene Location: 854659-855255 bp Ori: APC78542.1 Feature: domain Description: DUF3862 Location: 854839-855250 bp Feature: domain Description: DUF3862 Location: 854839-855250 bp Feature: gene Location: 861440-861799 bp Ori: APC81643.1 Feature: domain Description: GIY-YIG_LuxR_like Location: 861461-861755 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 861 461 -861 755 bp Feature: gene Location: 861870-862352 bp Feature: gene Location: 862648-863853 bp Ori: APC81578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862669-863041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862669-863041 bp Feature: domain Description: GIIM Note: maturase Location: 863104-863338 bp Feature: domain Description: GIIM Note: maturase Location: 8631 04-863338 bp Feature: domain Description: McrA Location: 863437-863752 bp Feature: domain Description: McrA Location: 863437-863752 bp Feature: gene Location: 863841-864350 bp Ori: APC81960.1 Feature: domain Description: RVT_N Location: 863862-864021 bp Feature: domain Description: RVT_N Location: 863862-864021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864081-864297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864081 -864297 bp Feature: gene Location: 865098-866450 bp Ori: APC80966.1 Feature: domain Description: PcnB Location: 865137-866400 bp Feature: domain Description: PcnB Location: 8651 37-866400 bp Feature: gene Location: 866440-867450 bp Ori: APC81206.1 Feature: domain Description: YcgL Location: 866503-867286 bp Feature: domain Description: YcgL Location: 866503-867286 bp Feature: gene Location: 3449314-3449436 bp Feature: gene Location: 3449766-3450152 bp Feature: gene Location: 3451235-3453061 bp Ori: APC78741.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3451292-3451529 bp Feature: domain Description: RVT_N Location: 3451 292-3451 529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3451592-3452246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3451 592-3452246 bp Feature: domain Description: GIIM Note: maturase Location: 3452309-3452543 bp Feature: domain Description: GIIM Note: maturase Location: 3452309-3452543 bp Feature: domain Description: HNHc Note: nucleases Location: 3452750-3452915 bp Feature: domain Description: HNHc Note: nucleases Location: 3452750-345291 5 bp Feature: gene Location: 3453402-3453872 bp Ori: APC81037.1 Feature: domain Description: TIGR02271 Location: 3453492-3453831 bp Feature: domain Description: TIGR02271 Location: 3453492-3453831 bp Feature: gene Location: 3453951-3454619 bp Ori: APC80528.1 Feature: domain Description: YsnF Location: 3454161-3454596 bp Feature: domain Description: YsnF Location: 34541 61 -3454596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1836 (pfam08876), HD_3 (pfam13023), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), XtmB (COG1783), Phage_prot_Gp6 (pfam05133), phageSPP1_gp7 (TIGR01641), tgl (PRK03187)
DUF3862 (pfam12978), GIY-YIG_LuxR_like (cd10451), McrA (COG4058), PcnB (COG0617), YcgL (pfam05166), TIGR02271 (conserved domain), YsnF (COG3861)