myRT

myRT report for GCA_001879625.1_ASM187962v1

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Seq: CP014148.1 Clostridium botulinum strain CDC_67190 chromosome, complete genome (3954777 bp)
Overview 1 RT 1: 1944040-1948151 bp 2 RT 2: 2605754-2611671 bp 3 RT 3: 2618065-2623407 bp Neighborhood of RT #1 [1944040, 1948151] DUF1836 HD_3 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [2605754, 2611685] tgl RVT_N RVT-GII GIIM HNHc YktD DUF3862 Neighborhood of RT #3 [2618065, 2623571] GIY-YIG_LuxR_like RVT-GII GIIM McrA RVT_N RVT-GII PcnB YcgL Feature: gene Location: 1944040-1944636 bp Ori: APC82294.1 Feature: domain Description: DUF1836 Location: 1944106-1944427 bp Feature: domain Description: DUF1 836 Location: 1 9441 06-1 944427 bp Feature: gene Location: 1945005-1945565 bp Ori: APC84529.1 Feature: domain Description: HD_3 Location: 1945044-1945518 bp Feature: domain Description: HD_3 Location: 1 945044-1 94551 8 bp Feature: gene Location: 1946119-1947327 bp Ori: APC84321.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1946176-1946413 bp Feature: domain Description: RVT_N Location: 1 9461 76-1 94641 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1946476-1947130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 946476-1 9471 30 bp Feature: domain Description: GIIM Note: maturase Location: 1947193-1947313 bp Feature: domain Description: GIIM Note: maturase Location: 1 9471 93-1 94731 3 bp Feature: gene Location: 1947494-1947940 bp Ori: APC83572.1 Feature: domain Description: HNHc Note: nucleases Location: 1947629-1947794 bp Feature: domain Description: HNHc Note: nucleases Location: 1 947629-1 947794 bp Feature: gene Location: 1947963-1948151 bp Feature: gene Location: 2605754-2606575 bp Ori: APC83849.1 Feature: domain Description: tgl Location: 2605757-2606567 bp Feature: domain Description: tgl Location: 2605757-2606567 bp Feature: gene Location: 2606572-2607567 bp Feature: gene Location: 2608258-2610084 bp Ori: APC85000.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2608315-2608552 bp Feature: domain Description: RVT_N Location: 260831 5-2608552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2608615-2609269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260861 5-2609269 bp Feature: domain Description: GIIM Note: maturase Location: 2609332-2609566 bp Feature: domain Description: GIIM Note: maturase Location: 2609332-2609566 bp Feature: domain Description: HNHc Note: nucleases Location: 2609773-2609938 bp Feature: domain Description: HNHc Note: nucleases Location: 2609773-2609938 bp Feature: gene Location: 2610789-2611298 bp Ori: APC83662.1 Feature: domain Description: YktD Location: 2610795-2611158 bp Feature: domain Description: YktD Location: 261 0795-261 1 1 58 bp Feature: gene Location: 2611407-2611685 bp Ori: APC83859.1 Feature: domain Description: DUF3862 Location: 2611413-2611671 bp Feature: domain Description: DUF3862 Location: 261 1 41 3-261 1 671 bp Feature: gene Location: 2618065-2618424 bp Ori: APC85581.1 Feature: domain Description: GIY-YIG_LuxR_like Location: 2618086-2618380 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 261 8086-261 8380 bp Feature: gene Location: 2618495-2618977 bp Feature: gene Location: 2619273-2620478 bp Ori: APC85818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2619294-2619666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 9294-261 9666 bp Feature: domain Description: GIIM Note: maturase Location: 2619729-2619963 bp Feature: domain Description: GIIM Note: maturase Location: 261 9729-261 9963 bp Feature: domain Description: McrA Location: 2620062-2620377 bp Feature: domain Description: McrA Location: 2620062-2620377 bp Feature: gene Location: 2620466-2620975 bp Ori: APC83217.1 Feature: domain Description: RVT_N Location: 2620487-2620646 bp Feature: domain Description: RVT_N Location: 2620487-2620646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620706-2620922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620706-2620922 bp Feature: gene Location: 2621726-2623078 bp Ori: APC85859.1 Feature: domain Description: PcnB Location: 2621765-2623028 bp Feature: domain Description: PcnB Location: 2621 765-2623028 bp Feature: gene Location: 2623068-2623571 bp Ori: APC82852.1 Feature: domain Description: YcgL Location: 2623134-2623407 bp Feature: domain Description: YcgL Location: 26231 34-2623407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1836 (pfam08876), HD_3 (pfam13023), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), tgl (PRK03187), YktD (COG3315), DUF3862 (pfam12978), GIY-YIG_LuxR_like (cd10451)
McrA (COG4058), PcnB (COG0617), YcgL (pfam05166)