myRT

myRT report for GCA_001886415.1_ASM188641v1

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Seq: CP018027.1 Alteromonas mediterranea strain CP49 chromosome, complete genome (4361254 bp)
Overview 1 RT 1: 4160866-4165341 bp Neighborhood of RT #1 [4160866, 4165352] Imp-YgjV Phage_int_SAM_5 INT_C_like_1 RVT-Retrons PinE Feature: gene Location: 4160866-4161342 bp Ori: APD99308.1 Feature: domain Description: Imp-YgjV Location: 4160872-4161316 bp Feature: domain Description: Imp-YgjV Location: 41 60872-41 61 31 6 bp Feature: gene Location: 4161651-4162919 bp Ori: APD99729.1 Feature: domain Description: Phage_int_SAM_5 Location: 4162071-4162296 bp Feature: domain Description: Phage_int_SAM_5 Location: 41 62071 -41 62296 bp Feature: domain Description: INT_C_like_1 Location: 4162398-4162866 bp Feature: domain Description: INT_C_like_1 Location: 41 62398-41 62866 bp Feature: gene Location: 4162955-4163857 bp Ori: APD99309.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4163108-4163615 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 631 08-41 6361 5 bp Feature: gene Location: 4163829-4164059 bp Feature: gene Location: 4164789-4165352 bp Ori: APD99311.1 Feature: domain Description: PinE Location: 4164804-4165341 bp Feature: domain Description: PinE Location: 41 64804-41 65341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Imp-YgjV (pfam10688), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), RVT-Retrons, PinE (COG1961)

Seq: CP018028.1 Alteromonas mediterranea strain CP49 plasmid MCP49-600, complete sequence (610127 bp)
Overview 1 RT 1: 290279-295601 bp Neighborhood of RT #1 [290279, 295609] HTH_XRE RVT-Retrons recomb_XerC recD_rel Feature: gene Location: 290279-290512 bp Feature: gene Location: 290562-290855 bp Ori: APE00072.1 Feature: domain Description: HTH_XRE Location: 290577-290739 bp Feature: domain Description: HTH_XRE Location: 2 90577-2 90739 bp Feature: gene Location: 290842-291831 bp Ori: APE00073.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 290980-291550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 90980-2 91550 bp Feature: gene Location: 292144-293421 bp Ori: APE00074.1 Feature: domain Description: recomb_XerC Location: 292957-293140 bp Feature: domain Description: recomb_XerC Location: 2 92 957-2 93140 bp Feature: gene Location: 293414-295609 bp Ori: APE00075.1 Feature: domain Description: recD_rel Location: 293450-295601 bp Feature: domain Description: recD_rel Location: 2 93450-2 95601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, recomb_XerC (TIGR02224), recD_rel (TIGR01448)