myRT

myRT report for GCA_001886635.1_ASM188663v1

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Seq: CP018065.1 Enterococcus faecium strain E1 chromosome, complete genome (2933268 bp)
Overview 1 RT 1: 28521-40596 bp 2 RT 2: 934550-941232 bp 3 RT 3: 1613926-1619796 bp Neighborhood of RT #1 [28521, 40604] NT_2-5OAS_ClassI-CCAase ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Neighborhood of RT #2 [934550, 941309] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA PHP_HisPPase SMC_prok_B SMC_prok_B Neighborhood of RT #3 [1613926, 1619807] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 28521-29558 bp Ori: APE38957.1 Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 28614-29031 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 2861 4-29031 bp Feature: gene Location: 29685-30188 bp Ori: APE38958.1 Feature: domain Description: ArdA Location: 29703-30174 bp Feature: domain Description: ArdA Location: 29703-301 74 bp Feature: gene Location: 30529-32439 bp Ori: APE38959.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30862-31600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30862-31 600 bp Feature: domain Description: HNHc Note: nucleases Location: 32155-32320 bp Feature: domain Description: HNHc Note: nucleases Location: 321 55-32320 bp Feature: gene Location: 33209-33304 bp Ori: APE38960.1 Feature: domain Description: DUF3789 Location: 33218-33302 bp Feature: domain Description: DUF3789 Location: 3321 8-33302 bp Feature: gene Location: 33319-34503 bp Ori: APE38961.1 Feature: domain Description: HTH_XRE Location: 33349-33493 bp Feature: domain Description: HTH_XRE Location: 33349-33493 bp Feature: domain Description: Rol_Rep_N Location: 33526-33790 bp Feature: domain Description: Rol_Rep_N Location: 33526-33790 bp Feature: domain Description: Rep_trans Location: 33814-34426 bp Feature: domain Description: Rep_trans Location: 3381 4-34426 bp Feature: gene Location: 35038-36180 bp Ori: APE38962.1 Feature: domain Description: Dcm Location: 35041-36154 bp Feature: domain Description: Dcm Location: 35041 -361 54 bp Feature: gene Location: 36225-36605 bp Ori: APE38963.1 Feature: domain Description: FtsK Location: 36240-36480 bp Feature: domain Description: FtsK Location: 36240-36480 bp Feature: gene Location: 36707-38509 bp Ori: APE41573.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37001-37697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37001 -37697 bp Feature: domain Description: HNHc Note: nucleases Location: 38237-38396 bp Feature: domain Description: HNHc Note: nucleases Location: 38237-38396 bp Feature: gene Location: 39208-40191 bp Feature: domain Description: FtsK_SpoIIIE Location: 39865-40105 bp Feature: domain Description: FtsK_SpoIIIE Location: 39865-401 05 bp Feature: gene Location: 40260-40604 bp Ori: APE41574.1 Feature: domain Description: RelB_DinJ Location: 40470-40596 bp Feature: domain Description: RelB_DinJ Location: 40470-40596 bp Feature: gene Location: 934550-935734 bp Ori: APE39764.1 Feature: domain Description: HTH_XRE Location: 934580-934724 bp Feature: domain Description: HTH_XRE Location: 934580-934724 bp Feature: domain Description: Rol_Rep_N Location: 934757-935021 bp Feature: domain Description: Rol_Rep_N Location: 934757-935021 bp Feature: domain Description: Rep_trans Location: 935045-935657 bp Feature: domain Description: Rep_trans Location: 935045-935657 bp Feature: gene Location: 935749-935868 bp Ori: APE39765.1 Feature: domain Description: DUF3789 Location: 935758-935851 bp Feature: domain Description: DUF3789 Location: 935758-935851 bp Feature: gene Location: 936614-938524 bp Ori: APE39766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936947-937685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936947-937685 bp Feature: domain Description: HNHc Note: nucleases Location: 938240-938405 bp Feature: domain Description: HNHc Note: nucleases Location: 938240-938405 bp Feature: gene Location: 938865-939365 bp Ori: APE39767.1 Feature: domain Description: ArdA Location: 938883-939354 bp Feature: domain Description: ArdA Location: 938883-939354 bp Feature: gene Location: 939462-941309 bp Ori: APE39768.1 Feature: domain Description: PHP_HisPPase Location: 939489-939966 bp Feature: domain Description: PHP_HisPPase Location: 939489-939966 bp Feature: domain Description: SMC_prok_B Location: 940368-940467 bp Feature: domain Description: SMC_prok_B Location: 940368-940467 bp Feature: domain Description: SMC_prok_B Location: 940797-941232 bp Feature: domain Description: SMC_prok_B Location: 940797-941 232 bp Feature: gene Location: 1613926-1614654 bp Ori: APE40395.1 Feature: domain Description: PRK09362 Location: 1613929-1614631 bp Feature: domain Description: PRK09362 Location: 1 61 3929-1 61 4631 bp Feature: gene Location: 1614910-1615287 bp Feature: gene Location: 1615856-1617244 bp Ori: APE40397.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1616177-1616792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 61 77-1 61 6792 bp Feature: domain Description: GIIM Note: maturase Location: 1616849-1617065 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 6849-1 61 7065 bp Feature: gene Location: 1617366-1618661 bp Ori: APE40398.1 Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1617378-1618647 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 61 7378-1 61 8647 bp Feature: gene Location: 1618674-1619807 bp Ori: APE40399.1 Feature: domain Description: PRK06019 Location: 1618707-1619796 bp Feature: domain Description: PRK0601 9 Location: 1 61 8707-1 61 9796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NT_2-5OAS_ClassI-CCAase (cd05400), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Dcm (COG0270), FtsK (COG1674)
FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384), PHP_HisPPase (cd07432), SMC_prok_B (TIGR02168), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)