myRT

myRT report for GCA_001886715.1_ASM188671v1

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Seq: CP018082.1 Nocardia soli strain Y48 chromosome, complete genome (7310115 bp)
Overview 1 RT 1: 5245210-5249725 bp 2 RT 2: 6152211-6158459 bp Neighborhood of RT #1 [5245210, 5249725] DUF1266 RVT-Retrons DUF5302 Neighborhood of RT #2 [6152211, 6158491] DEDD_Tnp_IS110 COG3547 PHA02517 RVT-GII GIIM HTH_23 Tra8 PHA02517 Feature: gene Location: 5245210-5246073 bp Ori: APE36410.1 Feature: domain Description: DUF1266 Location: 5245450-5246029 bp Feature: domain Description: DUF1 266 Location: 5245450-5246029 bp Feature: gene Location: 5246051-5246938 bp Feature: gene Location: 5247196-5248422 bp Ori: APE38662.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5247589-5248189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5247589-52481 89 bp Feature: gene Location: 5248825-5249037 bp Ori: APE36412.1 Feature: domain Description: DUF5302 Location: 5248882-5249032 bp Feature: domain Description: DUF5302 Location: 5248882-5249032 bp Feature: gene Location: 5249102-5249725 bp Feature: gene Location: 6152211-6153422 bp Ori: APE37060.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 6152238-6152661 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 61 52238-61 52661 bp Feature: domain Description: COG3547 Location: 6152769-6153162 bp Feature: domain Description: COG3547 Location: 61 52769-61 531 62 bp Feature: gene Location: 6153808-6154281 bp Ori: APE37061.1 Feature: domain Description: PHA02517 Location: 6153859-6154207 bp Feature: domain Description: PHA0251 7 Location: 61 53859-61 54207 bp Feature: gene Location: 6154805-6156256 bp Ori: APE37062.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155123-6155810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 551 23-61 5581 0 bp Feature: domain Description: GIIM Note: maturase Location: 6155885-6156080 bp Feature: domain Description: GIIM Note: maturase Location: 61 55885-61 56080 bp Feature: gene Location: 6156435-6157826 bp Ori: APE38789.1 Feature: domain Description: HTH_23 Location: 6156465-6156576 bp Feature: domain Description: HTH_23 Location: 61 56465-61 56576 bp Feature: domain Description: Tra8 Location: 6156870-6157818 bp Feature: domain Description: Tra8 Location: 61 56870-61 5781 8 bp Feature: gene Location: 6158021-6158491 bp Feature: domain Description: PHA02517 Location: 6158030-6158459 bp Feature: domain Description: PHA0251 7 Location: 61 58030-61 58459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1266 (pfam06889), RVT-Retrons, DUF5302 (pfam17227), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_23 (pfam13384), Tra8 (COG2826)