myRT

myRT report for GCA_001886775.1_ASM188677v1

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Seq: CP013241.1 Clostridium botulinum strain CDC_67071 plasmid pNPD7, complete sequence (235650 bp)
Overview 1 RT 1: 21757-25217 bp 2 RT 2: 223767-228207 bp Neighborhood of RT #1 [21757, 25217] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [223767, 228207] RVT_N RVT-GII GIIM HNHc YpzJ YpzJ Feature: gene Location: 21757-21930 bp Feature: gene Location: 21962-22321 bp Feature: gene Location: 22924-24747 bp Ori: APF25126.1 Gene: ltrA Feature: domain Description: RVT_N Location: 22981-23218 bp Feature: domain Description: RVT_N Location: 22981 -2321 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23281-23935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23281 -23935 bp Feature: domain Description: GIIM Note: maturase Location: 23998-24232 bp Feature: domain Description: GIIM Note: maturase Location: 23998-24232 bp Feature: domain Description: HNHc Note: nucleases Location: 24439-24604 bp Feature: domain Description: HNHc Note: nucleases Location: 24439-24604 bp Feature: gene Location: 24775-25017 bp Feature: gene Location: 25062-25217 bp Feature: gene Location: 223767-224168 bp Feature: gene Location: 224168-225145 bp Feature: gene Location: 225791-227614 bp Ori: APF25124.1 Gene: ltrA Feature: domain Description: RVT_N Location: 225848-226085 bp Feature: domain Description: RVT_N Location: 225848-226085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226148-226802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2261 48-226802 bp Feature: domain Description: GIIM Note: maturase Location: 226865-227099 bp Feature: domain Description: GIIM Note: maturase Location: 226865-227099 bp Feature: domain Description: HNHc Note: nucleases Location: 227306-227471 bp Feature: domain Description: HNHc Note: nucleases Location: 227306-227471 bp Feature: gene Location: 227749-227931 bp Ori: APF25220.1 Feature: domain Description: YpzJ Location: 227752-227812 bp Feature: domain Description: YpzJ Location: 227752-22781 2 bp Feature: domain Description: YpzJ Location: 227866-227917 bp Feature: domain Description: YpzJ Location: 227866-22791 7 bp Feature: gene Location: 227962-228207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YpzJ (COG3478)

Seq: CP013242.1 Clostridium botulinum strain CDC_67071 chromosome, complete genome (4116555 bp)
Overview 1 RT 1: 915100-920428 bp 2 RT 2: 1337748-1342303 bp 3 RT 3: 2437636-2443983 bp 4 RT 4: 2606656-2614424 bp 5 RT 5: 3729558-3733859 bp Neighborhood of RT #1 [915100, 920428] YHI9 YHI9 RVT-GII HNHc Neighborhood of RT #2 [1337748, 1342311] RVT_N RVT-GII GIIM HNHc xerC Neighborhood of RT #3 [2437636, 2443994] YbhL XRE RVT-GII GIIM AHBA_syn WecE Neighborhood of RT #4 [2606656, 2614435] COG3682 RVT-UG5 nitrilase PBP1_ABC_uncharacterized_transporter PhnK Neighborhood of RT #5 [3729558, 3733870] PRK14453 Mor RVT-CRISPR-like COG1568 SAM_DCase_Bsu Feature: gene Location: 915100-916020 bp Ori: APF27001.1 Feature: domain Description: YHI9 Location: 915103-915997 bp Feature: domain Description: YHI9 Location: 915103-915997 bp Feature: gene Location: 916311-917159 bp Ori: APF27724.1 Feature: domain Description: YHI9 Location: 916314-917151 bp Feature: domain Description: YHI9 Location: 916314-917151 bp Feature: gene Location: 918199-920019 bp Ori: APF27052.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 918520-919219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91852 0-9192 19 bp Feature: domain Description: HNHc Note: nucleases Location: 919744-919909 bp Feature: domain Description: HNHc Note: nucleases Location: 919744-919909 bp Feature: gene Location: 920049-920207 bp Feature: gene Location: 920315-920428 bp Feature: gene Location: 1337748-1338080 bp Feature: gene Location: 1338117-1338305 bp Feature: gene Location: 1338963-1340786 bp Ori: APF27106.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1339020-1339257 bp Feature: domain Description: RVT_N Location: 133902 0-13392 57 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1339320-1339974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133932 0-1339974 bp Feature: domain Description: GIIM Note: maturase Location: 1340037-1340271 bp Feature: domain Description: GIIM Note: maturase Location: 1340037-13402 71 bp Feature: domain Description: HNHc Note: nucleases Location: 1340478-1340643 bp Feature: domain Description: HNHc Note: nucleases Location: 1340478-1340643 bp Feature: gene Location: 1341054-1341233 bp Feature: gene Location: 1341316-1342311 bp Ori: APF25372.1 Feature: domain Description: xerC Location: 1341490-1342303 bp Feature: domain Description: xerC Location: 1341490-1342 303 bp Feature: gene Location: 2437636-2438127 bp Ori: APF28954.1 Feature: domain Description: YbhL Location: 2437648-2438098 bp Feature: domain Description: YbhL Location: 2 437648-2 438098 bp Feature: gene Location: 2438124-2438324 bp Ori: APF26479.1 Feature: domain Description: XRE Location: 2438127-2438316 bp Feature: domain Description: XRE Location: 2 43812 7-2 438316 bp Feature: gene Location: 2438686-2439981 bp Ori: APF27007.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2438941-2439631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 438941-2 439631 bp Feature: domain Description: GIIM Note: maturase Location: 2439691-2439916 bp Feature: domain Description: GIIM Note: maturase Location: 2 439691-2 439916 bp Feature: gene Location: 2441553-2442674 bp Ori: APF27739.1 Feature: domain Description: AHBA_syn Location: 2441616-2442657 bp Feature: domain Description: AHBA_syn Location: 2 441616-2 442 657 bp Feature: gene Location: 2442819-2443994 bp Ori: APF27754.1 Feature: domain Description: WecE Location: 2442825-2443983 bp Feature: domain Description: WecE Location: 2 442 82 5-2 443983 bp Feature: gene Location: 2606656-2607036 bp Ori: APF28801.1 Feature: domain Description: COG3682 Location: 2606668-2607028 bp Feature: domain Description: COG3682 Location: 2 606668-2 60702 8 bp Feature: gene Location: 2607435-2608064 bp Feature: gene Location: 2608079-2611324 bp Ori: APF25368.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2608529-2609018 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 60852 9-2 609018 bp Feature: domain Description: nitrilase Location: 2610563-2611220 bp Feature: domain Description: nitrilase Location: 2 610563-2 6112 2 0 bp Feature: gene Location: 2612678-2613649 bp Ori: APF27935.1 Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 2612771-2613602 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 2 612 771-2 613602 bp Feature: gene Location: 2613680-2614435 bp Ori: APF28196.1 Feature: domain Description: PhnK Location: 2613683-2614424 bp Feature: domain Description: PhnK Location: 2 613683-2 61442 4 bp Feature: gene Location: 3729558-3730592 bp Ori: APF27761.1 Gene: cfr Feature: domain Description: PRK14453 Location: 3729564-3730587 bp Feature: domain Description: PRK14453 Location: 372 9564-3730587 bp Feature: gene Location: 3731172-3731447 bp Ori: APF28029.1 Feature: domain Description: Mor Location: 3731205-3731436 bp Feature: domain Description: Mor Location: 37312 05-3731436 bp Feature: gene Location: 3731664-3731801 bp Ori: APF26883.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3731670-3731793 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3731670-3731793 bp Feature: gene Location: 3732170-3733366 bp Ori: APF27347.1 Feature: domain Description: COG1568 Location: 3732224-3733103 bp Feature: domain Description: COG1568 Location: 3732 2 2 4-3733103 bp Feature: gene Location: 3733520-3733870 bp Ori: APF25783.1 Gene: speD Feature: domain Description: SAM_DCase_Bsu Location: 3733529-3733859 bp Feature: domain Description: SAM_DCase_Bsu Location: 373352 9-3733859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), RVT-GII, HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), xerC (PRK01287), YbhL (COG0670), XRE (COG1476), AHBA_syn (cd00616), WecE (COG0399)
COG3682 (Predicted transcriptional regulator ), RVT-UG5, nitrilase (cl11424), PBP1_ABC_uncharacterized_transporter, PhnK (COG4107), PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional), Mor (pfam08765), RVT-CRISPR, COG1568 (Predicted methyltransferase ), SAM_DCase_Bsu (TIGR03330)