myRT

myRT report for GCA_001886835.1_ASM188683v1

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Seq: CP017458.1 Legionella pneumophila subsp. fraseri strain Dallas 1E chromosome, complete genome (3500943 bp)
Overview 1 RT 1: 805301-809840 bp 2 RT 2: 2155929-2161733 bp 3 RT 3: 2304796-2311548 bp Neighborhood of RT #1 [805301, 809878] HTH_23 HTH_33 InsE RVT-GII RVT_1 GIIM Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 PHA02517 Neighborhood of RT #2 [2155929, 2161733] ACH1 RVT-UG18 Neighborhood of RT #3 [2304796, 2311548] NTP-PPase_MazG_Cterm Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT_N RVT-GII GIIM Tra_M Feature: gene Location: 805301-805858 bp Feature: domain Description: HTH_23 Location: 805388-805511 bp Feature: domain Description: HTH_23 Location: 805388-80551 1 bp Feature: domain Description: HTH_33 Location: 805604-805769 bp Feature: domain Description: HTH_33 Location: 805604-805769 bp Feature: gene Location: 805951-806244 bp Ori: APF05513.1 Feature: domain Description: InsE Location: 805960-806224 bp Feature: domain Description: InsE Location: 805960-806224 bp Feature: gene Location: 806781-807935 bp Ori: APF05514.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806985-807183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806985-8071 83 bp Feature: domain Description: RVT_1 Location: 807237-807555 bp Feature: domain Description: RVT_1 Location: 807237-807555 bp Feature: domain Description: GIIM Note: maturase Location: 807633-807852 bp Feature: domain Description: GIIM Note: maturase Location: 807633-807852 bp Feature: gene Location: 807995-809446 bp Ori: APF05515.1 Feature: domain Description: Tnp_DNA_bind Location: 808034-808202 bp Feature: domain Description: Tnp_DNA_bind Location: 808034-808202 bp Feature: domain Description: DDE_Tnp_1 Location: 808859-809153 bp Feature: domain Description: DDE_Tnp_1 Location: 808859-8091 53 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 809159-809438 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 8091 59-809438 bp Feature: gene Location: 809534-809878 bp Ori: APF05516.1 Feature: domain Description: PHA02517 Location: 809597-809840 bp Feature: domain Description: PHA0251 7 Location: 809597-809840 bp Feature: gene Location: 2155929-2157242 bp Ori: APF06595.1 Feature: domain Description: ACH1 Location: 2155935-2157231 bp Feature: domain Description: ACH1 Location: 21 55935-21 57231 bp Feature: gene Location: 2158048-2159061 bp Feature: gene Location: 2159559-2159921 bp Ori: APF06597.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2159562-2159919 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 21 59562-21 5991 9 bp Feature: gene Location: 2159946-2160209 bp Feature: gene Location: 2160402-2161733 bp Feature: gene Location: 2304796-2305173 bp Ori: APF06724.1 Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2304823-2305159 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2304823-23051 59 bp Feature: gene Location: 2305479-2306930 bp Ori: APF06725.1 Feature: domain Description: Tnp_DNA_bind Location: 2305518-2305686 bp Feature: domain Description: Tnp_DNA_bind Location: 230551 8-2305686 bp Feature: domain Description: DDE_Tnp_1 Location: 2306343-2306637 bp Feature: domain Description: DDE_Tnp_1 Location: 2306343-2306637 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2306643-2306922 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2306643-2306922 bp Feature: gene Location: 2307001-2308521 bp Ori: APF06726.1 Feature: domain Description: RVT_N Location: 2307058-2307301 bp Feature: domain Description: RVT_N Location: 2307058-2307301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2307346-2307970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2307346-2307970 bp Feature: domain Description: GIIM Note: maturase Location: 2308021-2308255 bp Feature: domain Description: GIIM Note: maturase Location: 2308021 -2308255 bp Feature: gene Location: 2309369-2309743 bp Ori: APF06727.1 Feature: domain Description: Tra_M Location: 2309417-2309612 bp Feature: domain Description: Tra_M Location: 230941 7-230961 2 bp Feature: gene Location: 2309941-2311548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), InsE (COG2963), RVT-GII, RVT_1 (pfam00078), GIIM (pfam08388), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), PHA02517 (putative transposase OrfB; Reviewed)
ACH1 (COG0427), RVT-UG18, NTP-PPase_MazG_Cterm (cd11529), RVT_N (pfam13655), Tra_M (pfam05261)