myRT

myRT report for GCA_001886895.1_ASM188689v1

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Seq: CP013186.1 Escherichia coli strain FORC_029 plasmid FORC_029p, complete sequence (77339 bp)
Overview 1 RT 1: 6363-10958 bp 2 RT 2: 20434-24293 bp 3 RT 3: 49325-53318 bp Neighborhood of RT #1 [6363, 11020] PRK13704 RVT_N RVT-GII GIIM HNHc DDE_Tnp_IS66 Neighborhood of RT #2 [20434, 24325] Rve RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #3 [49325, 53320] PHA02517 RVT-GII GIIM PHA02517 umuC Feature: gene Location: 6363-6896 bp Ori: APE82519.1 Feature: domain Description: PRK13704 Location: 6366-6891 bp Feature: domain Description: PRK1 3704 Location: 6366-6891 bp Feature: gene Location: 7231-7491 bp Feature: gene Location: 8065-9732 bp Ori: APE82521.1 Feature: domain Description: RVT_N Location: 8113-8350 bp Feature: domain Description: RVT_N Location: 81 1 3-8350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8401-9043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8401 -9043 bp Feature: domain Description: GIIM Note: maturase Location: 9094-9328 bp Feature: domain Description: GIIM Note: maturase Location: 9094-9328 bp Feature: domain Description: HNHc Note: nucleases Location: 9538-9697 bp Feature: domain Description: HNHc Note: nucleases Location: 9538-9697 bp Feature: gene Location: 9794-9985 bp Feature: gene Location: 10187-11020 bp Ori: APE82523.1 Feature: domain Description: DDE_Tnp_IS66 Location: 10193-10958 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 01 93-1 0958 bp Feature: gene Location: 20434-21150 bp Ori: APE82535.1 Feature: domain Description: Rve Location: 20449-21094 bp Feature: domain Description: Rve Location: 20449-21 094 bp Feature: gene Location: 21278-21679 bp Feature: gene Location: 21888-22847 bp Ori: APE82537.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21894-22434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 894-22434 bp Feature: domain Description: GIIM Note: maturase Location: 22482-22713 bp Feature: domain Description: GIIM Note: maturase Location: 22482-2271 3 bp Feature: gene Location: 23018-23944 bp Ori: APE82538.1 Feature: domain Description: COG3436 Location: 23354-23834 bp Feature: domain Description: COG3436 Location: 23354-23834 bp Feature: gene Location: 23975-24325 bp Ori: APE82539.1 Feature: domain Description: TnpB_IS66 Location: 24002-24293 bp Feature: domain Description: TnpB_IS66 Location: 24002-24293 bp Feature: gene Location: 49325-49804 bp Ori: APE82572.1 Feature: domain Description: PHA02517 Location: 49385-49739 bp Feature: domain Description: PHA0251 7 Location: 49385-49739 bp Feature: gene Location: 50017-50325 bp Feature: gene Location: 50411-51919 bp Ori: APE82574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50669-51401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50669-51 401 bp Feature: domain Description: GIIM Note: maturase Location: 51476-51674 bp Feature: domain Description: GIIM Note: maturase Location: 51 476-51 674 bp Feature: gene Location: 52036-52482 bp Ori: APE82575.1 Feature: domain Description: PHA02517 Location: 52039-52480 bp Feature: domain Description: PHA0251 7 Location: 52039-52480 bp Feature: gene Location: 52466-53320 bp Ori: APE82576.1 Feature: domain Description: umuC Location: 52520-53318 bp Feature: domain Description: umuC Location: 52520-5331 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_IS66 (pfam03050), Rve (COG3316), COG3436 (Transposase ), TnpB_IS66 (pfam05717), PHA02517 (putative transposase OrfB; Reviewed)
umuC (PRK03609)

Seq: CP013185.1 Escherichia coli strain FORC_029, complete genome (5189944 bp)
Overview 1 RT 1: 873642-883976 bp 2 RT 2: 1248093-1252446 bp 3 RT 3: 4471272-4476233 bp 4 RT 4: 4667436-4673517 bp 5 RT 5: 4682215-4686878 bp 6 RT 6: 4689744-4697508 bp Neighborhood of RT #1 [873642, 883987] Peptidase_S6 autotrans_barl COG3547 RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #2 [1248093, 1252448] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [4471272, 4476247] fecE RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4667436, 4673519] InsE PHA02517 RVT-GII GIIM PHA02517 TonB-siderophor Neighborhood of RT #5 [4682215, 4686880] COG3547 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [4689744, 4697510] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 873642-877760 bp Ori: APE78455.1 Feature: domain Description: Peptidase_S6 Location: 873795-875967 bp Feature: domain Description: Peptidase_S6 Location: 873795-875967 bp Feature: domain Description: autotrans_barl Location: 876531-877758 bp Feature: domain Description: autotrans_barl Location: 876531-877758 bp Feature: gene Location: 878547-879623 bp Ori: APE78456.1 Feature: domain Description: COG3547 Location: 878586-879507 bp Feature: domain Description: COG3547 Location: 878586-879507 bp Feature: gene Location: 880165-881688 bp Ori: APE78457.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880438-881170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880438-881170 bp Feature: domain Description: GIIM Note: maturase Location: 881245-881443 bp Feature: domain Description: GIIM Note: maturase Location: 8812 45-881443 bp Feature: gene Location: 882280-882519 bp Ori: APE78458.1 Feature: domain Description: PHA02517 Location: 882283-882454 bp Feature: domain Description: PHA02 517 Location: 882 2 83-882 454 bp Feature: gene Location: 882836-883987 bp Ori: APE78459.1 Feature: domain Description: HTH_38 Location: 882845-882959 bp Feature: domain Description: HTH_38 Location: 882 845-882 959 bp Feature: domain Description: Tra8 Location: 882995-883976 bp Feature: domain Description: Tra8 Location: 882 995-883976 bp Feature: gene Location: 1248093-1248962 bp Feature: gene Location: 1248965-1249351 bp Ori: APE78804.1 Feature: domain Description: PHA02517 Location: 1248968-1249349 bp Feature: domain Description: PHA02 517 Location: 12 48968-12 49349 bp Feature: gene Location: 1249528-1251051 bp Ori: APE78805.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249801-1250533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 49801-12 50533 bp Feature: domain Description: GIIM Note: maturase Location: 1250608-1250806 bp Feature: domain Description: GIIM Note: maturase Location: 12 50608-12 50806 bp Feature: gene Location: 1251643-1252122 bp Ori: APE78806.1 Feature: domain Description: PHA02517 Location: 1251703-1252057 bp Feature: domain Description: PHA02 517 Location: 12 51703-12 52 057 bp Feature: gene Location: 1252122-1252448 bp Ori: APE78807.1 Feature: domain Description: InsE Location: 1252125-1252446 bp Feature: domain Description: InsE Location: 12 52 12 5-12 52 446 bp Feature: gene Location: 4471272-4471883 bp Ori: APE81862.1 Feature: domain Description: fecE Location: 4471275-4471881 bp Feature: domain Description: fecE Location: 44712 75-4471881 bp Feature: gene Location: 4472441-4472698 bp Feature: gene Location: 4473349-4474872 bp Ori: APE81864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4473622-4474354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447362 2 -4474354 bp Feature: domain Description: GIIM Note: maturase Location: 4474429-4474627 bp Feature: domain Description: GIIM Note: maturase Location: 447442 9-447462 7 bp Feature: gene Location: 4475464-4475889 bp Ori: APE81865.1 Feature: domain Description: PHA02517 Location: 4475488-4475824 bp Feature: domain Description: PHA02 517 Location: 4475488-447582 4 bp Feature: gene Location: 4475945-4476247 bp Ori: APE81866.1 Feature: domain Description: InsE Location: 4475984-4476233 bp Feature: domain Description: InsE Location: 4475984-44762 33 bp Feature: gene Location: 4667436-4667762 bp Ori: APE82054.1 Feature: domain Description: InsE Location: 4667439-4667760 bp Feature: domain Description: InsE Location: 4667439-4667760 bp Feature: gene Location: 4667762-4668241 bp Ori: APE82055.1 Feature: domain Description: PHA02517 Location: 4667822-4668176 bp Feature: domain Description: PHA02 517 Location: 466782 2 -4668176 bp Feature: gene Location: 4668848-4670356 bp Ori: APE82056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4669106-4669838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4669106-4669838 bp Feature: domain Description: GIIM Note: maturase Location: 4669913-4670111 bp Feature: domain Description: GIIM Note: maturase Location: 4669913-4670111 bp Feature: gene Location: 4670533-4670919 bp Ori: APE82057.1 Feature: domain Description: PHA02517 Location: 4670536-4670917 bp Feature: domain Description: PHA02 517 Location: 4670536-4670917 bp Feature: gene Location: 4671321-4673519 bp Ori: APE82058.1 Feature: domain Description: TonB-siderophor Location: 4671456-4673517 bp Feature: domain Description: TonB-siderophor Location: 4671456-4673517 bp Feature: gene Location: 4682215-4683348 bp Ori: APE82068.1 Feature: domain Description: COG3547 Location: 4682242-4683220 bp Feature: domain Description: COG3547 Location: 4682 2 42 -46832 2 0 bp Feature: gene Location: 4683397-4683783 bp Ori: APE82069.1 Feature: domain Description: PHA02517 Location: 4683400-4683781 bp Feature: domain Description: PHA02 517 Location: 4683400-4683781 bp Feature: gene Location: 4683960-4685483 bp Ori: APE82070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4684233-4684965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46842 33-4684965 bp Feature: domain Description: GIIM Note: maturase Location: 4685040-4685238 bp Feature: domain Description: GIIM Note: maturase Location: 4685040-46852 38 bp Feature: gene Location: 4686075-4686554 bp Ori: APE82071.1 Feature: domain Description: PHA02517 Location: 4686135-4686489 bp Feature: domain Description: PHA02 517 Location: 4686135-4686489 bp Feature: gene Location: 4686554-4686880 bp Ori: APE82072.1 Feature: domain Description: InsE Location: 4686557-4686878 bp Feature: domain Description: InsE Location: 4686557-4686878 bp Feature: gene Location: 4689744-4693862 bp Ori: APE82078.1 Feature: domain Description: Peptidase_S6 Location: 4689897-4692069 bp Feature: domain Description: Peptidase_S6 Location: 4689897-4692 069 bp Feature: domain Description: autotrans_barl Location: 4692633-4693860 bp Feature: domain Description: autotrans_barl Location: 4692 633-4693860 bp Feature: gene Location: 4694027-4694413 bp Ori: APE82079.1 Feature: domain Description: PHA02517 Location: 4694030-4694411 bp Feature: domain Description: PHA02 517 Location: 4694030-4694411 bp Feature: gene Location: 4694590-4696113 bp Ori: APE82080.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4694863-4695595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4694863-4695595 bp Feature: domain Description: GIIM Note: maturase Location: 4695670-4695868 bp Feature: domain Description: GIIM Note: maturase Location: 4695670-4695868 bp Feature: gene Location: 4696705-4697184 bp Ori: APE82081.1 Feature: domain Description: PHA02517 Location: 4696765-4697119 bp Feature: domain Description: PHA02 517 Location: 4696765-4697119 bp Feature: gene Location: 4697184-4697510 bp Ori: APE82082.1 Feature: domain Description: InsE Location: 4697187-4697508 bp Feature: domain Description: InsE Location: 4697187-4697508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963), fecE (PRK11231)
TonB-siderophor (TIGR01783)