myRT

myRT report for GCA_001887555.1_ASM188755v1

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Seq: CP016910.1 Burkholderia pseudomallei strain Burk178-Type1 chromosome 2, complete sequence (3236690 bp)
Overview 1 RT 1: 2442428-2448724 bp 2 RT 2: 2490178-2496673 bp Neighborhood of RT #1 [2442428, 2448756] Alginate_lyase Alginate_lyase DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [2490178, 2496705] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 rve TnpB_IS66 Feature: gene Location: 2442428-2443672 bp Ori: APF95601.1 Feature: domain Description: Alginate_lyase Location: 2442713-2443124 bp Feature: domain Description: Alginate_lyase Location: 244271 3-24431 24 bp Feature: domain Description: Alginate_lyase Location: 2443313-2443469 bp Feature: domain Description: Alginate_lyase Location: 244331 3-2443469 bp Feature: gene Location: 2444961-2445884 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2444964-2445747 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2444964-2445747 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2445768-2445879 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2445768-2445879 bp Feature: gene Location: 2445942-2447204 bp Ori: APF95602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446146-2446803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24461 46-2446803 bp Feature: domain Description: GIIM Note: maturase Location: 2446881-2447097 bp Feature: domain Description: GIIM Note: maturase Location: 2446881 -2447097 bp Feature: gene Location: 2447746-2448357 bp Feature: domain Description: COG3436 Location: 2448055-2448358 bp Feature: domain Description: COG3436 Location: 2448055-2448358 bp Feature: gene Location: 2448421-2448756 bp Ori: APF96332.1 Feature: domain Description: TnpB_IS66 Location: 2448439-2448724 bp Feature: domain Description: TnpB_IS66 Location: 2448439-2448724 bp Feature: gene Location: 2490178-2490685 bp Feature: gene Location: 2491677-2492618 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2491680-2492463 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2491 680-2492463 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2492484-2492595 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2492484-2492595 bp Feature: gene Location: 2492676-2493938 bp Ori: APF95622.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492880-2493537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492880-2493537 bp Feature: domain Description: GIIM Note: maturase Location: 2493615-2493831 bp Feature: domain Description: GIIM Note: maturase Location: 249361 5-2493831 bp Feature: gene Location: 2494480-2495091 bp Feature: domain Description: COG3436 Location: 2494789-2495092 bp Feature: domain Description: COG3436 Location: 2494789-2495092 bp Feature: gene Location: 2495155-2496705 bp Ori: APF95623.1 Feature: domain Description: rve Location: 2495623-2496001 bp Feature: domain Description: rve Location: 2495623-2496001 bp Feature: domain Description: TnpB_IS66 Location: 2496481-2496673 bp Feature: domain Description: TnpB_IS66 Location: 2496481 -2496673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), rve (pfam00665)

Seq: CP016909.1 Burkholderia pseudomallei strain Burk178-Type1 chromosome 1, complete sequence (4054259 bp)
Overview 1 RT 1: 3145238-3148499 bp Neighborhood of RT #1 [3145238, 3148516] RVT-Retrons AAA_21 AAA_21 PinE Feature: gene Location: 3145238-3146206 bp Ori: APF93817.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3145367-3145925 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3145367-314592 5 bp Feature: gene Location: 3146203-3147546 bp Ori: APF92857.1 Feature: domain Description: AAA_21 Location: 3146284-3146434 bp Feature: domain Description: AAA_2 1 Location: 31462 84-3146434 bp Feature: domain Description: AAA_21 Location: 3146776-3146947 bp Feature: domain Description: AAA_2 1 Location: 3146776-3146947 bp Feature: gene Location: 3147941-3148516 bp Ori: APF92858.1 Feature: domain Description: PinE Location: 3147950-3148499 bp Feature: domain Description: PinE Location: 3147950-3148499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_21 (pfam13304), PinE (COG1961)