myRT

myRT report for GCA_001887575.1_ASM188757v1

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Seq: CP016912.1 Burkholderia pseudomallei strain Burk178-Type2 chromosome 2, complete sequence (3236690 bp)
Overview 1 RT 1: 2442417-2448713 bp 2 RT 2: 2490167-2496662 bp Neighborhood of RT #1 [2442417, 2448745] Alginate_lyase Alginate_lyase DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [2490167, 2496694] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 rve TnpB_IS66 Feature: gene Location: 2442417-2443661 bp Ori: APG01645.1 Feature: domain Description: Alginate_lyase Location: 2442702-2443113 bp Feature: domain Description: Alginate_lyase Location: 2442702-24431 1 3 bp Feature: domain Description: Alginate_lyase Location: 2443302-2443458 bp Feature: domain Description: Alginate_lyase Location: 2443302-2443458 bp Feature: gene Location: 2444950-2445873 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2444953-2445736 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2444953-2445736 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2445757-2445868 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2445757-2445868 bp Feature: gene Location: 2445931-2447193 bp Ori: APG01646.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446135-2446792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24461 35-2446792 bp Feature: domain Description: GIIM Note: maturase Location: 2446870-2447086 bp Feature: domain Description: GIIM Note: maturase Location: 2446870-2447086 bp Feature: gene Location: 2447735-2448346 bp Feature: domain Description: COG3436 Location: 2448044-2448347 bp Feature: domain Description: COG3436 Location: 2448044-2448347 bp Feature: gene Location: 2448410-2448745 bp Ori: APG02380.1 Feature: domain Description: TnpB_IS66 Location: 2448428-2448713 bp Feature: domain Description: TnpB_IS66 Location: 2448428-244871 3 bp Feature: gene Location: 2490167-2490674 bp Feature: gene Location: 2491666-2492607 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2491669-2492452 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2491 669-2492452 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2492473-2492584 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2492473-2492584 bp Feature: gene Location: 2492665-2493927 bp Ori: APG01666.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492869-2493526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492869-2493526 bp Feature: domain Description: GIIM Note: maturase Location: 2493604-2493820 bp Feature: domain Description: GIIM Note: maturase Location: 2493604-2493820 bp Feature: gene Location: 2494469-2495080 bp Feature: domain Description: COG3436 Location: 2494778-2495081 bp Feature: domain Description: COG3436 Location: 2494778-2495081 bp Feature: gene Location: 2495144-2496694 bp Ori: APG01667.1 Feature: domain Description: rve Location: 2495612-2495990 bp Feature: domain Description: rve Location: 249561 2-2495990 bp Feature: domain Description: TnpB_IS66 Location: 2496470-2496662 bp Feature: domain Description: TnpB_IS66 Location: 2496470-2496662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), rve (pfam00665)

Seq: CP016911.1 Burkholderia pseudomallei strain Burk178-Type2 chromosome 1, complete sequence (4054192 bp)
Overview 1 RT 1: 3145168-3148429 bp Neighborhood of RT #1 [3145168, 3148446] RVT-Retrons AAA_21 AAA_21 PinE Feature: gene Location: 3145168-3146136 bp Ori: APF99856.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3145297-3145855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31452 97-3145855 bp Feature: gene Location: 3146133-3147476 bp Ori: APF98901.1 Feature: domain Description: AAA_21 Location: 3146214-3146364 bp Feature: domain Description: AAA_2 1 Location: 31462 14-3146364 bp Feature: domain Description: AAA_21 Location: 3146706-3146877 bp Feature: domain Description: AAA_2 1 Location: 3146706-3146877 bp Feature: gene Location: 3147871-3148446 bp Ori: APF98902.1 Feature: domain Description: PinE Location: 3147880-3148429 bp Feature: domain Description: PinE Location: 3147880-314842 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_21 (pfam13304), PinE (COG1961)