myRT

myRT report for GCA_001887695.1_ASM188769v1

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Seq: CP017637.1 Bradyrhizobium japonicum strain J5, complete genome (10138651 bp)
Overview 1 RT 1: 2981843-2991055 bp 2 RT 2: 4105057-4110894 bp 3 RT 3: 4858936-4865851 bp 4 RT 4: 5001887-5008531 bp 5 RT 5: 8653894-8658927 bp 6 RT 6: 9247751-9253775 bp 7 RT 7: 9462557-9468574 bp 8 RT 8: 10025091-10029762 bp 9 RT 9: 10034634-10040716 bp 10 RT 10: 10126911-10133859 bp Neighborhood of RT #1 [2981843, 2991087] PRK00915 RVT-GII GIIM Calx_beta O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT AIDA PBP2_TRAP_SBP_like_1 Neighborhood of RT #2 [4105057, 4110935] AAK_UMPK-MosAB SnoaL_3 RVT-GII GIIM MhpD MdlB Neighborhood of RT #3 [4858936, 4865925] ClpS ClpA RVT-GII GIIM PEGA MFS_MMR_MDR_like Neighborhood of RT #4 [5001887, 5008548] OVP1 RVT-GII GIIM PBP2_Bug_TTT BamE Neighborhood of RT #5 [8653894, 8658927] Tra5 HTH_Tnp_1 RVT-GII GIIM Neighborhood of RT #6 [9247751, 9253870] group_II_RT_mat RVT-GII IS285 IS285 IstB_IS21_ATP IstB_IS21 Neighborhood of RT #7 [9462557, 9469104] HAMP COG3547 RVT-GII GIIM PHA00617 Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #8 [10025091, 10029824] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #9 [10034634, 10040721] RVT-GII RVT-GII RVT-GII PRK06847 Neighborhood of RT #10 [10126911, 10133960] HU_IHF DUF772 DDE_Tnp_1 DDE_Tnp_1 RVT-GII GIIM rve rve Feature: gene Location: 2981843-2982088 bp Feature: gene Location: 2982638-2984200 bp Ori: APG09483.1 Feature: domain Description: PRK00915 Location: 2982665-2984177 bp Feature: domain Description: PRK0091 5 Location: 2982665-29841 77 bp Feature: gene Location: 2984814-2986055 bp Ori: APG09484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985006-2985621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985006-2985621 bp Feature: domain Description: GIIM Note: maturase Location: 2985675-2985885 bp Feature: domain Description: GIIM Note: maturase Location: 2985675-2985885 bp Feature: gene Location: 2986250-2989852 bp Ori: APG09485.1 Feature: domain Description: Calx_beta Location: 2986889-2987165 bp Feature: domain Description: Calx_beta Location: 2986889-29871 65 bp Feature: domain Description: O_hepto_targRPT Location: 2988623-2988722 bp Feature: domain Description: O_hepto_targRPT Location: 2988623-2988722 bp Feature: domain Description: O_hepto_targRPT Location: 2988725-2988824 bp Feature: domain Description: O_hepto_targRPT Location: 2988725-2988824 bp Feature: domain Description: O_hepto_targRPT Location: 2988884-2988974 bp Feature: domain Description: O_hepto_targRPT Location: 2988884-2988974 bp Feature: domain Description: O_hepto_targRPT Location: 2989001-2989088 bp Feature: domain Description: O_hepto_targRPT Location: 2989001 -2989088 bp Feature: domain Description: O_hepto_targRPT Location: 2989091-2989193 bp Feature: domain Description: O_hepto_targRPT Location: 2989091 -29891 93 bp Feature: domain Description: O_hepto_targRPT Location: 2989196-2989268 bp Feature: domain Description: O_hepto_targRPT Location: 29891 96-2989268 bp Feature: domain Description: O_hepto_targRPT Location: 2989358-2989430 bp Feature: domain Description: O_hepto_targRPT Location: 2989358-2989430 bp Feature: domain Description: AIDA Location: 2989430-2989520 bp Feature: domain Description: AIDA Location: 2989430-2989520 bp Feature: gene Location: 2990074-2991087 bp Ori: APG09486.1 Feature: domain Description: PBP2_TRAP_SBP_like_1 Location: 2990167-2991055 bp Feature: domain Description: PBP2_TRAP_SBP_like_1 Location: 29901 67-2991 055 bp Feature: gene Location: 4105057-4105869 bp Ori: APG10576.1 Feature: domain Description: AAK_UMPK-MosAB Location: 4105081-4105861 bp Feature: domain Description: AAK_UMPK-MosAB Location: 41 05081 -41 05861 bp Feature: gene Location: 4106001-4106459 bp Ori: APG10577.1 Feature: domain Description: SnoaL_3 Location: 4106052-4106406 bp Feature: domain Description: SnoaL_3 Location: 41 06052-41 06406 bp Feature: gene Location: 4106919-4108295 bp Ori: APG10578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4107246-4107861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 07246-41 07861 bp Feature: domain Description: GIIM Note: maturase Location: 4107915-4108125 bp Feature: domain Description: GIIM Note: maturase Location: 41 0791 5-41 081 25 bp Feature: gene Location: 4108393-4109094 bp Ori: APG10579.1 Feature: domain Description: MhpD Location: 4108471-4109083 bp Feature: domain Description: MhpD Location: 41 08471 -41 09083 bp Feature: gene Location: 4109133-4110935 bp Ori: APG10580.1 Feature: domain Description: MdlB Location: 4109208-4110894 bp Feature: domain Description: MdlB Location: 41 09208-41 1 0894 bp Feature: gene Location: 4858936-4859268 bp Ori: APG11316.1 Feature: domain Description: ClpS Location: 4858978-4859266 bp Feature: domain Description: ClpS Location: 4858978-4859266 bp Feature: gene Location: 4859561-4861975 bp Ori: APG11317.1 Feature: domain Description: ClpA Location: 4859576-4861784 bp Feature: domain Description: ClpA Location: 4859576-4861 784 bp Feature: gene Location: 4862446-4863822 bp Ori: APG11318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4862773-4863388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4862773-4863388 bp Feature: domain Description: GIIM Note: maturase Location: 4863442-4863652 bp Feature: domain Description: GIIM Note: maturase Location: 4863442-4863652 bp Feature: gene Location: 4863923-4864381 bp Ori: APG11319.1 Feature: domain Description: PEGA Location: 4864001-4864145 bp Feature: domain Description: PEGA Location: 4864001 -48641 45 bp Feature: gene Location: 4864504-4865925 bp Ori: APG11320.1 Feature: domain Description: MFS_MMR_MDR_like Location: 4864576-4865851 bp Feature: domain Description: MFS_MMR_MDR_like Location: 4864576-4865851 bp Feature: gene Location: 5001887-5002495 bp Feature: gene Location: 5002779-5004899 bp Ori: APG11469.1 Gene: hppA Feature: domain Description: OVP1 Location: 5002785-5004897 bp Feature: domain Description: OVP1 Location: 5002785-5004897 bp Feature: gene Location: 5005509-5006750 bp Ori: APG11470.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5005701-5006316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5005701 -500631 6 bp Feature: domain Description: GIIM Note: maturase Location: 5006370-5006580 bp Feature: domain Description: GIIM Note: maturase Location: 5006370-5006580 bp Feature: gene Location: 5006944-5007945 bp Ori: APG11471.1 Feature: domain Description: PBP2_Bug_TTT Location: 5007046-5007919 bp Feature: domain Description: PBP2_Bug_TTT Location: 5007046-500791 9 bp Feature: gene Location: 5008063-5008548 bp Ori: APG11472.1 Feature: domain Description: BamE Location: 5008141-5008531 bp Feature: domain Description: BamE Location: 50081 41 -5008531 bp Feature: gene Location: 8653894-8654766 bp Ori: APG14760.1 Feature: domain Description: Tra5 Location: 8653936-8654644 bp Feature: domain Description: Tra5 Location: 8653936-8654644 bp Feature: gene Location: 8654744-8654998 bp Ori: APG14761.1 Feature: domain Description: HTH_Tnp_1 Location: 8654750-8654957 bp Feature: domain Description: HTH_Tnp_1 Location: 8654750-8654957 bp Feature: gene Location: 8655175-8656419 bp Ori: APG14762.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8655376-8656030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8655376-8656030 bp Feature: domain Description: GIIM Note: maturase Location: 8656111-8656339 bp Feature: domain Description: GIIM Note: maturase Location: 86561 1 1 -8656339 bp Feature: gene Location: 8657927-8658160 bp Feature: gene Location: 8658628-8658927 bp Feature: gene Location: 9247751-9250066 bp Feature: gene Location: 9250359-9250889 bp Ori: APG15190.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 9250368-9250782 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9250368-9250782 bp Feature: gene Location: 9250938-9251654 bp Ori: APG15191.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9251292-9251613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9251 292-9251 61 3 bp Feature: gene Location: 9251924-9252367 bp Feature: domain Description: IS285 Location: 9251927-9252002 bp Feature: domain Description: IS285 Location: 9251 927-9252002 bp Feature: domain Description: IS285 Location: 9252239-9252365 bp Feature: domain Description: IS285 Location: 9252239-9252365 bp Feature: gene Location: 9253139-9253870 bp Ori: APG15192.1 Feature: domain Description: IstB_IS21_ATP Location: 9253160-9253244 bp Feature: domain Description: IstB_IS21 _ATP Location: 92531 60-9253244 bp Feature: domain Description: IstB_IS21 Location: 9253250-9253775 bp Feature: domain Description: IstB_IS21 Location: 9253250-9253775 bp Feature: gene Location: 9462557-9463545 bp Feature: domain Description: HAMP Location: 9463334-9463532 bp Feature: domain Description: HAMP Location: 9463334-9463532 bp Feature: gene Location: 9465340-9466134 bp Feature: domain Description: COG3547 Location: 9465346-9466078 bp Feature: domain Description: COG3547 Location: 9465346-9466078 bp Feature: gene Location: 9466245-9466877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9466251-9466506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9466251 -9466506 bp Feature: domain Description: GIIM Note: maturase Location: 9466581-9466785 bp Feature: domain Description: GIIM Note: maturase Location: 9466581 -9466785 bp Feature: gene Location: 9466976-9467305 bp Ori: APG15385.1 Feature: domain Description: PHA00617 Location: 9467102-9467288 bp Feature: domain Description: PHA0061 7 Location: 94671 02-9467288 bp Feature: gene Location: 9467446-9469104 bp Feature: domain Description: Resolvase Location: 9467458-9467899 bp Feature: domain Description: Resolvase Location: 9467458-9467899 bp Feature: domain Description: Recombinase Location: 9467986-9468346 bp Feature: domain Description: Recombinase Location: 9467986-9468346 bp Feature: domain Description: Zn_ribbon_recom Location: 9468388-9468574 bp Feature: domain Description: Zn_ribbon_recom Location: 9468388-9468574 bp Feature: gene Location: 10025091-10025957 bp Ori: APG15898.1 Feature: domain Description: INT_RitC_C_like Location: 10025106-10025661 bp Feature: domain Description: INT_RitC_C_like Location: 1 00251 06-1 0025661 bp Feature: gene Location: 10026116-10026463 bp Ori: APG15899.1 Feature: domain Description: DDE_Tnp_IS66 Location: 10026128-10026446 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 00261 28-1 0026446 bp Feature: gene Location: 10026612-10027943 bp Ori: APG15900.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10026906-10027569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0026906-1 0027569 bp Feature: domain Description: GIIM Note: maturase Location: 10027635-10027857 bp Feature: domain Description: GIIM Note: maturase Location: 1 0027635-1 0027857 bp Feature: gene Location: 10027876-10028712 bp Ori: APG15901.1 Feature: domain Description: LomR Location: 10027912-10028623 bp Feature: domain Description: LomR Location: 1 002791 2-1 0028623 bp Feature: gene Location: 10029156-10029824 bp Ori: APG15902.1 Feature: domain Description: PHA02518 Location: 10029165-10029762 bp Feature: domain Description: PHA0251 8 Location: 1 00291 65-1 0029762 bp Feature: gene Location: 10034634-10034870 bp Feature: gene Location: 10035003-10035269 bp Feature: gene Location: 10036636-10037322 bp Ori: APG15909.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10036639-10036945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0036639-1 0036945 bp Feature: gene Location: 10037355-10037549 bp Ori: APG15910.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10037385-10037538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0037385-1 0037538 bp Feature: gene Location: 10037554-10038114 bp Ori: APG15911.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10037962-10038040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0037962-1 0038040 bp Feature: gene Location: 10038121-10038450 bp Feature: gene Location: 10039588-10040721 bp Ori: APG15913.1 Feature: domain Description: PRK06847 Location: 10039591-10040716 bp Feature: domain Description: PRK06847 Location: 1 0039591 -1 004071 6 bp Feature: gene Location: 10126911-10127189 bp Ori: APG16009.1 Feature: domain Description: HU_IHF Location: 10126926-10127175 bp Feature: domain Description: HU_IHF Location: 1 01 26926-1 01 271 75 bp Feature: gene Location: 10127427-10128773 bp Ori: APG16010.1 Feature: domain Description: DUF772 Location: 10127586-10127802 bp Feature: domain Description: DUF772 Location: 1 01 27586-1 01 27802 bp Feature: domain Description: DDE_Tnp_1 Location: 10128255-10128474 bp Feature: domain Description: DDE_Tnp_1 Location: 1 01 28255-1 01 28474 bp Feature: domain Description: DDE_Tnp_1 Location: 10128546-10128663 bp Feature: domain Description: DDE_Tnp_1 Location: 1 01 28546-1 01 28663 bp Feature: gene Location: 10129126-10130367 bp Ori: APG16011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10129318-10129933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 2931 8-1 01 29933 bp Feature: domain Description: GIIM Note: maturase Location: 10129987-10130197 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 29987-1 01 301 97 bp Feature: gene Location: 10131795-10133306 bp Ori: APG16012.1 Feature: domain Description: rve Location: 10132302-10132623 bp Feature: domain Description: rve Location: 1 01 32302-1 01 32623 bp Feature: gene Location: 10133658-10133960 bp Ori: APG16013.1 Feature: domain Description: rve Location: 10133661-10133859 bp Feature: domain Description: rve Location: 1 01 33661 -1 01 33859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00915 (2-isopropylmalate synthase; Validated), RVT-GII, GIIM (pfam08388), Calx_beta (smart00237), O_hepto_targRPT (TIGR04415), AIDA (pfam16168), PBP2_TRAP_SBP_like_1 (cd13674), AAK_UMPK-MosAB (cd04255), SnoaL_3 (pfam13474), MhpD (COG3971)
MdlB (COG1132), ClpS (pfam02617), ClpA (TIGR02639), PEGA (pfam08308), MFS_MMR_MDR_like (cd17504), OVP1 (COG3808), PBP2_Bug_TTT (cd07012), BamE (COG2913), Tra5 (COG2801), HTH_Tnp_1 (pfam01527)
group_II_RT_mat (TIGR04416), IS285 (COG3328), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), HAMP (smart00304), COG3547 (Transposase ), PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)
INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), PRK06847 (hypothetical protein; Provisional), HU_IHF (cl00257), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), rve (pfam00665)