myRT

myRT report for GCA_001887985.3_ASM188798v3

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Seq: CP026585.2 Klebsiella pneumoniae strain WCHKP649 chromosome, complete genome (5461116 bp)
Overview 1 RT 1: 1246703-1251588 bp 2 RT 2: 1410745-1413521 bp 3 RT 3: 1871890-1876762 bp 4 RT 4: 1892503-1898765 bp 5 RT 5: 3259877-3263976 bp 6 RT 6: 3332709-3336971 bp 7 RT 7: 3687384-3691410 bp 8 RT 8: 3695095-3699933 bp Neighborhood of RT #1 [1246703, 1251593] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1410745, 1413521] RVT-GII Neighborhood of RT #3 [1871890, 1876776] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1892503, 1898765] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3259877, 3263987] umuC PRK10276 RVT-GII DinI Neighborhood of RT #6 [3332709, 3337009] PRK10597 RVT-GII PRK05318 Neighborhood of RT #7 [3687384, 3692294] DinI RVT-GII Phage_GPA Neighborhood of RT #8 [3695095, 3699983] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1246703-1249087 bp Ori: AVE09987.1 Feature: domain Description: Phage_GPA Location: 1247267-1248233 bp Feature: domain Description: Phage_GPA Location: 1 247267-1 248233 bp Feature: gene Location: 1249317-1249568 bp Feature: gene Location: 1249568-1251052 bp Ori: AVE09989.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249970-1250660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 249970-1 250660 bp Feature: gene Location: 1251160-1251348 bp Feature: gene Location: 1251360-1251593 bp Ori: AVE09991.1 Feature: domain Description: DinI Location: 1251405-1251588 bp Feature: domain Description: DinI Location: 1 251 405-1 251 588 bp Feature: gene Location: 1410745-1410948 bp Feature: gene Location: 1410941-1411279 bp Feature: gene Location: 1411376-1412860 bp Ori: AVE10149.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1411778-1412468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 1 778-1 41 2468 bp Feature: gene Location: 1412860-1413111 bp Feature: gene Location: 1413264-1413521 bp Feature: gene Location: 1871890-1873059 bp Ori: AVE10534.1 Feature: domain Description: dacD Location: 1871899-1873054 bp Feature: domain Description: dacD Location: 1 871 899-1 873054 bp Feature: gene Location: 1873329-1873580 bp Feature: gene Location: 1873580-1875064 bp Ori: AVE10536.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873982-1874672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 873982-1 874672 bp Feature: gene Location: 1875146-1875619 bp Ori: AVE10537.1 Feature: domain Description: PRK10016 Location: 1875149-1875608 bp Feature: domain Description: PRK1 001 6 Location: 1 8751 49-1 875608 bp Feature: gene Location: 1875718-1876776 bp Ori: AVE10538.1 Feature: domain Description: YccC Location: 1875724-1876762 bp Feature: domain Description: YccC Location: 1 875724-1 876762 bp Feature: gene Location: 1892503-1893606 bp Ori: AVE10558.1 Feature: domain Description: STKc_PknB_like Location: 1892635-1893076 bp Feature: domain Description: STKc_PknB_like Location: 1 892635-1 893076 bp Feature: gene Location: 1893676-1893918 bp Feature: gene Location: 1894165-1895265 bp Ori: AVE10559.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1894348-1894876 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 894348-1 894876 bp Feature: gene Location: 1895380-1897656 bp Ori: AVE10560.1 Feature: domain Description: AAA_15 Location: 1895413-1896421 bp Feature: domain Description: AAA_1 5 Location: 1 89541 3-1 896421 bp Feature: gene Location: 1898535-1898765 bp Feature: gene Location: 3259877-3261142 bp Ori: AVE11844.1 Feature: domain Description: umuC Location: 3259880-3261140 bp Feature: domain Description: umuC Location: 3259880-3261 1 40 bp Feature: gene Location: 3261145-3261564 bp Ori: AVE11845.1 Feature: domain Description: PRK10276 Location: 3261148-3261559 bp Feature: domain Description: PRK1 0276 Location: 3261 1 48-3261 559 bp Feature: gene Location: 3261643-3263127 bp Ori: AVE11846.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3262045-3262735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3262045-3262735 bp Feature: gene Location: 3263127-3263378 bp Feature: gene Location: 3263745-3263987 bp Ori: AVE11848.1 Feature: domain Description: DinI Location: 3263796-3263976 bp Feature: domain Description: DinI Location: 3263796-3263976 bp Feature: gene Location: 3332709-3332999 bp Feature: gene Location: 3333011-3333244 bp Ori: AVE11920.1 Feature: domain Description: PRK10597 Location: 3333014-3333239 bp Feature: domain Description: PRK1 0597 Location: 333301 4-3333239 bp Feature: gene Location: 3333323-3334807 bp Ori: AVE11921.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333725-3334415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333725-333441 5 bp Feature: gene Location: 3334807-3335058 bp Feature: gene Location: 3335648-3337009 bp Ori: AVE11923.1 Feature: domain Description: PRK05318 Location: 3335672-3336971 bp Feature: domain Description: PRK0531 8 Location: 3335672-3336971 bp Feature: gene Location: 3687384-3687689 bp Ori: AVE12248.1 Feature: domain Description: DinI Location: 3687498-3687684 bp Feature: domain Description: DinI Location: 3687498-3687684 bp Feature: gene Location: 3687628-3687816 bp Feature: gene Location: 3687917-3689401 bp Ori: AVE12249.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3688319-3689009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368831 9-3689009 bp Feature: gene Location: 3689401-3689652 bp Feature: gene Location: 3689880-3692294 bp Ori: AVE12251.1 Feature: domain Description: Phage_GPA Location: 3690444-3691410 bp Feature: domain Description: Phage_GPA Location: 3690444-3691 41 0 bp Feature: gene Location: 3695095-3695973 bp Ori: AVE12259.1 Feature: domain Description: Phage_CI_repr Location: 3695122-3695305 bp Feature: domain Description: Phage_CI_repr Location: 36951 22-3695305 bp Feature: domain Description: Phage_CI_repr Location: 3695434-3695626 bp Feature: domain Description: Phage_CI_repr Location: 3695434-3695626 bp Feature: domain Description: Phage_CI_C Location: 3695653-3695947 bp Feature: domain Description: Phage_CI_C Location: 3695653-3695947 bp Feature: gene Location: 3695985-3696929 bp Feature: gene Location: 3697028-3698512 bp Ori: AVE12261.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3697430-3698120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3697430-36981 20 bp Feature: gene Location: 3698512-3698763 bp Feature: gene Location: 3698931-3699983 bp Ori: AVE12263.1 Feature: domain Description: int Location: 3698934-3699933 bp Feature: domain Description: int Location: 3698934-3699933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP026584.1 Klebsiella pneumoniae strain WCHKP649 plasmid pKPC2_095649, complete sequence (156099 bp)
Overview 1 RT 1: 28418-32639 bp 2 RT 2: 126206-130408 bp Neighborhood of RT #1 [28418, 32639] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [126206, 130425] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 28418-28840 bp Ori: AVE08622.1 Feature: domain Description: DUF1380 Location: 28421-28715 bp Feature: domain Description: DUF1380 Location: 2 842 1-2 8715 bp Feature: gene Location: 28837-29028 bp Feature: gene Location: 29342-31009 bp Ori: AVE08624.1 Gene: ltrA Feature: domain Description: RVT_N Location: 29390-29627 bp Feature: domain Description: RVT_N Location: 2 9390-2 962 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29678-30320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9678-3032 0 bp Feature: domain Description: GIIM Note: maturase Location: 30371-30605 bp Feature: domain Description: GIIM Note: maturase Location: 30371-30605 bp Feature: domain Description: HNHc Note: nucleases Location: 30815-30974 bp Feature: domain Description: HNHc Note: nucleases Location: 30815-30974 bp Feature: gene Location: 31889-32146 bp Feature: gene Location: 32409-32639 bp Feature: gene Location: 126206-126877 bp Ori: AVE08743.1 Feature: domain Description: Plasmid_stab_B Location: 126221-126428 bp Feature: domain Description: Plasmid_stab_B Location: 12 62 2 1-12 642 8 bp Feature: domain Description: Plasmid_stab_B Location: 126533-126740 bp Feature: domain Description: Plasmid_stab_B Location: 12 6533-12 6740 bp Feature: gene Location: 126880-127851 bp Ori: AVE08744.1 Feature: domain Description: StbA Location: 126883-127828 bp Feature: domain Description: StbA Location: 12 6883-12 782 8 bp Feature: gene Location: 128100-129584 bp Ori: AVE08745.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128502-129192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 8502 -12 9192 bp Feature: gene Location: 129584-129835 bp Feature: gene Location: 129994-130425 bp Ori: AVE08747.1 Feature: domain Description: PRK10276 Location: 130045-130408 bp Feature: domain Description: PRK102 76 Location: 130045-130408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Plasmid_stab_B (pfam10784), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)