myRT

myRT report for GCA_001889325.1_ASM188932v1

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Seq: CP013243.1 Clostridium botulinum strain CDC_1632, complete genome (4393047 bp)
Overview 1 RT 1: 263507-268062 bp 2 RT 2: 3818897-3824248 bp 3 RT 3: 3974420-3983569 bp 4 RT 4: 3999672-4003537 bp 5 RT 5: 4118984-4123245 bp 6 RT 6: 4238154-4244683 bp 7 RT 7: 4273300-4279343 bp Neighborhood of RT #1 [263507, 268070] RVT_N RVT-GII GIIM HNHc xerC Neighborhood of RT #2 [3818897, 3824250] RimL DUF523 RVT_N RVT-GII GIIM HNHc HTH_ARSR arsM Neighborhood of RT #3 [3974420, 3983625] COG4188 COG4188 PRK15121 RVT_N RVT-GII GIIM HNHc Acetyltransf_7 RVT_N RVT-GII GIIM HNHc N6_N4_Mtase Neighborhood of RT #4 [3999672, 4003537] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #5 [4118984, 4123245] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #6 [4238154, 4244706] RVT_N RVT-GII GIIM HNHc ARO8 YHI9 Neighborhood of RT #7 [4273300, 4279417] AAA-ATPase_like PDDEXK_9 DnaB_2 RVT-GII HNHc sigma70-ECF DUF1659 Feature: gene Location: 263507-263839 bp Feature: gene Location: 263876-264064 bp Feature: gene Location: 264722-266545 bp Ori: APH16000.1 Gene: ltrA Feature: domain Description: RVT_N Location: 264779-265016 bp Feature: domain Description: RVT_N Location: 264779-26501 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265079-265733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265079-265733 bp Feature: domain Description: GIIM Note: maturase Location: 265796-266030 bp Feature: domain Description: GIIM Note: maturase Location: 265796-266030 bp Feature: domain Description: HNHc Note: nucleases Location: 266237-266402 bp Feature: domain Description: HNHc Note: nucleases Location: 266237-266402 bp Feature: gene Location: 266813-266992 bp Feature: gene Location: 267075-268070 bp Ori: APH16589.1 Feature: domain Description: xerC Location: 267249-268062 bp Feature: domain Description: xerC Location: 267249-268062 bp Feature: gene Location: 3818897-3819427 bp Ori: APH14446.1 Feature: domain Description: RimL Location: 3818924-3819383 bp Feature: domain Description: RimL Location: 381 8924-381 9383 bp Feature: gene Location: 3819579-3819995 bp Ori: APH14950.1 Feature: domain Description: DUF523 Location: 3819588-3819987 bp Feature: domain Description: DUF523 Location: 381 9588-381 9987 bp Feature: gene Location: 3820672-3822498 bp Ori: APH17198.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3820729-3820969 bp Feature: domain Description: RVT_N Location: 3820729-3820969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821029-3821683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821 029-3821 683 bp Feature: domain Description: GIIM Note: maturase Location: 3821746-3821980 bp Feature: domain Description: GIIM Note: maturase Location: 3821 746-3821 980 bp Feature: domain Description: HNHc Note: nucleases Location: 3822187-3822352 bp Feature: domain Description: HNHc Note: nucleases Location: 38221 87-3822352 bp Feature: gene Location: 3823122-3823514 bp Ori: APH14719.1 Feature: domain Description: HTH_ARSR Location: 3823143-3823353 bp Feature: domain Description: HTH_ARSR Location: 38231 43-3823353 bp Feature: gene Location: 3823633-3824250 bp Ori: APH13575.1 Feature: domain Description: arsM Location: 3823651-3824248 bp Feature: domain Description: arsM Location: 3823651 -3824248 bp Feature: gene Location: 3974420-3975430 bp Ori: APH15102.1 Feature: domain Description: COG4188 Location: 3974750-3974894 bp Feature: domain Description: COG41 88 Location: 3974750-3974894 bp Feature: domain Description: COG4188 Location: 3974948-3975416 bp Feature: domain Description: COG41 88 Location: 3974948-397541 6 bp Feature: gene Location: 3976170-3977081 bp Ori: APH15938.1 Feature: domain Description: PRK15121 Location: 3976209-3976497 bp Feature: domain Description: PRK1 51 21 Location: 3976209-3976497 bp Feature: gene Location: 3977797-3979620 bp Ori: APH17272.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3977854-3978091 bp Feature: domain Description: RVT_N Location: 3977854-3978091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3978154-3978808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39781 54-3978808 bp Feature: domain Description: GIIM Note: maturase Location: 3978871-3979105 bp Feature: domain Description: GIIM Note: maturase Location: 3978871 -39791 05 bp Feature: domain Description: HNHc Note: nucleases Location: 3979312-3979477 bp Feature: domain Description: HNHc Note: nucleases Location: 397931 2-3979477 bp Feature: gene Location: 3980128-3980556 bp Ori: APH15995.1 Feature: domain Description: Acetyltransf_7 Location: 3980272-3980491 bp Feature: domain Description: Acetyltransf_7 Location: 3980272-3980491 bp Feature: gene Location: 3981276-3983102 bp Ori: APH17194.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3981333-3981573 bp Feature: domain Description: RVT_N Location: 3981 333-3981 573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3981633-3982287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3981 633-3982287 bp Feature: domain Description: GIIM Note: maturase Location: 3982350-3982584 bp Feature: domain Description: GIIM Note: maturase Location: 3982350-3982584 bp Feature: domain Description: HNHc Note: nucleases Location: 3982791-3982956 bp Feature: domain Description: HNHc Note: nucleases Location: 3982791 -3982956 bp Feature: gene Location: 3983238-3983423 bp Feature: gene Location: 3983437-3983625 bp Ori: APH15187.1 Feature: domain Description: N6_N4_Mtase Location: 3983449-3983569 bp Feature: domain Description: N6_N4_Mtase Location: 3983449-3983569 bp Feature: gene Location: 3999672-4000031 bp Feature: gene Location: 4000091-4000354 bp Feature: gene Location: 4000956-4002782 bp Ori: APH14152.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4001013-4001253 bp Feature: domain Description: RVT_N Location: 4001 01 3-4001 253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4001313-4001967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4001 31 3-4001 967 bp Feature: domain Description: GIIM Note: maturase Location: 4002030-4002264 bp Feature: domain Description: GIIM Note: maturase Location: 4002030-4002264 bp Feature: domain Description: HNHc Note: nucleases Location: 4002471-4002636 bp Feature: domain Description: HNHc Note: nucleases Location: 4002471 -4002636 bp Feature: gene Location: 4002920-4003159 bp Feature: gene Location: 4003349-4003537 bp Feature: gene Location: 4118984-4119913 bp Feature: gene Location: 4120005-4120349 bp Feature: gene Location: 4120952-4122775 bp Ori: APH15992.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4121009-4121246 bp Feature: domain Description: RVT_N Location: 41 21 009-41 21 246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4121309-4121963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 21 309-41 21 963 bp Feature: domain Description: GIIM Note: maturase Location: 4122026-4122260 bp Feature: domain Description: GIIM Note: maturase Location: 41 22026-41 22260 bp Feature: domain Description: HNHc Note: nucleases Location: 4122467-4122632 bp Feature: domain Description: HNHc Note: nucleases Location: 41 22467-41 22632 bp Feature: gene Location: 4122803-4123045 bp Feature: gene Location: 4123090-4123245 bp Feature: gene Location: 4238154-4238330 bp Feature: gene Location: 4238358-4238648 bp Feature: gene Location: 4239250-4241076 bp Ori: APH13404.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4239307-4239547 bp Feature: domain Description: RVT_N Location: 4239307-4239547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239607-4240261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239607-4240261 bp Feature: domain Description: GIIM Note: maturase Location: 4240324-4240558 bp Feature: domain Description: GIIM Note: maturase Location: 4240324-4240558 bp Feature: domain Description: HNHc Note: nucleases Location: 4240765-4240930 bp Feature: domain Description: HNHc Note: nucleases Location: 4240765-4240930 bp Feature: gene Location: 4241968-4243461 bp Ori: APH14231.1 Feature: domain Description: ARO8 Location: 4242007-4243414 bp Feature: domain Description: ARO8 Location: 4242007-424341 4 bp Feature: gene Location: 4243786-4244706 bp Ori: APH15370.1 Feature: domain Description: YHI9 Location: 4243789-4244683 bp Feature: domain Description: YHI9 Location: 4243789-4244683 bp Feature: gene Location: 4273300-4274994 bp Ori: APH13702.1 Feature: domain Description: AAA-ATPase_like Location: 4273315-4274197 bp Feature: domain Description: AAA-ATPase_like Location: 427331 5-42741 97 bp Feature: domain Description: PDDEXK_9 Location: 4274659-4274977 bp Feature: domain Description: PDDEXK_9 Location: 4274659-4274977 bp Feature: gene Location: 4275173-4275910 bp Ori: APH17227.1 Feature: domain Description: DnaB_2 Location: 4275569-4275767 bp Feature: domain Description: DnaB_2 Location: 4275569-4275767 bp Feature: gene Location: 4276590-4278389 bp Ori: APH16181.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4276908-4277607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4276908-4277607 bp Feature: domain Description: HNHc Note: nucleases Location: 4278141-4278279 bp Feature: domain Description: HNHc Note: nucleases Location: 42781 41 -4278279 bp Feature: gene Location: 4278575-4279117 bp Ori: APH15807.1 Feature: domain Description: sigma70-ECF Location: 4278617-4279097 bp Feature: domain Description: sigma70-ECF Location: 427861 7-4279097 bp Feature: gene Location: 4279196-4279417 bp Ori: APH16416.1 Feature: domain Description: DUF1659 Location: 4279220-4279343 bp Feature: domain Description: DUF1 659 Location: 4279220-4279343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), xerC (PRK01287), RimL (COG1670), DUF523 (pfam04463), HTH_ARSR (smart00418), arsM (PRK11873), COG4188 (Predicted dienelactone hydrolase )
PRK15121 (MDR efflux pump AcrAB transcriptional activator RobA), Acetyltransf_7 (pfam13508), N6_N4_Mtase (pfam01555), ARO8 (COG1167), YHI9 (COG0384), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), DnaB_2 (pfam07261), sigma70-ECF (TIGR02937), DUF1659 (pfam07872)