myRT

myRT report for GCA_001889365.1_ASM188936v1

Download annotations/find similar RTs

Seq: CP013296.1 Clostridium botulinum strain CDC_54064, complete genome (4235583 bp)
Overview 1 RT 1: 767946-771510 bp 2 RT 2: 2306666-2312859 bp 3 RT 3: 2355145-2360432 bp 4 RT 4: 3142871-3147532 bp 5 RT 5: 3183724-3187495 bp 6 RT 6: 3980416-3987021 bp 7 RT 7: 3993213-3999063 bp Neighborhood of RT #1 [767946, 771510] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [2306666, 2312885] RutF NimA RVT_N RVT-GII GIIM HNHc ABC2_membrane_2 CcmA Neighborhood of RT #3 [2355145, 2360455] RVT_N RVT-GII GIIM HNHc TIGR02271 YsnF Neighborhood of RT #4 [3142871, 3147532] DUF1836 HD_3 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #5 [3183724, 3187495] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #6 [3980416, 3987026] tgl RVT_N RVT-GII GIIM HNHc DUF3862 Neighborhood of RT #7 [3993213, 3999227] GIY-YIG_LuxR_like RVT_N RVT-GII GIIM McrA PcnB YcgL Feature: gene Location: 767946-768098 bp Feature: gene Location: 768126-768326 bp Feature: gene Location: 768435-770261 bp Ori: APH24494.1 Gene: ltrA Feature: domain Description: RVT_N Location: 768492-768729 bp Feature: domain Description: RVT_N Location: 768492-768729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768792-769446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768792-769446 bp Feature: domain Description: GIIM Note: maturase Location: 769509-769743 bp Feature: domain Description: GIIM Note: maturase Location: 769509-769743 bp Feature: domain Description: HNHc Note: nucleases Location: 769950-770115 bp Feature: domain Description: HNHc Note: nucleases Location: 769950-7701 1 5 bp Feature: gene Location: 770870-771067 bp Feature: gene Location: 771124-771510 bp Feature: gene Location: 2306666-2307220 bp Ori: APH24997.1 Feature: domain Description: RutF Location: 2306705-2307167 bp Feature: domain Description: RutF Location: 2306705-23071 67 bp Feature: gene Location: 2307705-2308199 bp Ori: APH22842.1 Feature: domain Description: NimA Location: 2307717-2308167 bp Feature: domain Description: NimA Location: 230771 7-23081 67 bp Feature: gene Location: 2308982-2310808 bp Ori: APH22072.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2309039-2309276 bp Feature: domain Description: RVT_N Location: 2309039-2309276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2309339-2309993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2309339-2309993 bp Feature: domain Description: GIIM Note: maturase Location: 2310056-2310290 bp Feature: domain Description: GIIM Note: maturase Location: 231 0056-231 0290 bp Feature: domain Description: HNHc Note: nucleases Location: 2310497-2310662 bp Feature: domain Description: HNHc Note: nucleases Location: 231 0497-231 0662 bp Feature: gene Location: 2311155-2311949 bp Ori: APH21535.1 Feature: domain Description: ABC2_membrane_2 Location: 2311176-2311806 bp Feature: domain Description: ABC2_membrane_2 Location: 231 1 1 76-231 1 806 bp Feature: gene Location: 2311968-2312885 bp Ori: APH21750.1 Feature: domain Description: CcmA Location: 2311974-2312859 bp Feature: domain Description: CcmA Location: 231 1 974-231 2859 bp Feature: gene Location: 2355145-2355267 bp Feature: gene Location: 2355597-2355983 bp Feature: gene Location: 2357065-2358891 bp Ori: APH22299.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2357122-2357359 bp Feature: domain Description: RVT_N Location: 23571 22-2357359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2357422-2358076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2357422-2358076 bp Feature: domain Description: GIIM Note: maturase Location: 2358139-2358373 bp Feature: domain Description: GIIM Note: maturase Location: 23581 39-2358373 bp Feature: domain Description: HNHc Note: nucleases Location: 2358580-2358745 bp Feature: domain Description: HNHc Note: nucleases Location: 2358580-2358745 bp Feature: gene Location: 2359232-2359708 bp Ori: APH22884.1 Feature: domain Description: TIGR02271 Location: 2359328-2359667 bp Feature: domain Description: TIGR02271 Location: 2359328-2359667 bp Feature: gene Location: 2359787-2360455 bp Ori: APH21222.1 Feature: domain Description: YsnF Location: 2359997-2360432 bp Feature: domain Description: YsnF Location: 2359997-2360432 bp Feature: gene Location: 3142871-3143467 bp Ori: APH21093.1 Feature: domain Description: DUF1836 Location: 3142937-3143258 bp Feature: domain Description: DUF1 836 Location: 31 42937-31 43258 bp Feature: gene Location: 3143836-3144396 bp Ori: APH21223.1 Feature: domain Description: HD_3 Location: 3143875-3144349 bp Feature: domain Description: HD_3 Location: 31 43875-31 44349 bp Feature: gene Location: 3145049-3146875 bp Ori: APH22594.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3145106-3145343 bp Feature: domain Description: RVT_N Location: 31 451 06-31 45343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3145406-3146060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 45406-31 46060 bp Feature: domain Description: GIIM Note: maturase Location: 3146123-3146357 bp Feature: domain Description: GIIM Note: maturase Location: 31 461 23-31 46357 bp Feature: domain Description: HNHc Note: nucleases Location: 3146564-3146729 bp Feature: domain Description: HNHc Note: nucleases Location: 31 46564-31 46729 bp Feature: gene Location: 3146995-3147213 bp Feature: gene Location: 3147263-3147532 bp Feature: gene Location: 3183724-3184200 bp Feature: gene Location: 3184240-3184695 bp Feature: gene Location: 3185313-3187139 bp Ori: APH21824.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3185370-3185607 bp Feature: domain Description: RVT_N Location: 31 85370-31 85607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3185670-3186324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 85670-31 86324 bp Feature: domain Description: GIIM Note: maturase Location: 3186387-3186621 bp Feature: domain Description: GIIM Note: maturase Location: 31 86387-31 86621 bp Feature: domain Description: HNHc Note: nucleases Location: 3186828-3186993 bp Feature: domain Description: HNHc Note: nucleases Location: 31 86828-31 86993 bp Feature: gene Location: 3187162-3187350 bp Feature: gene Location: 3187280-3187495 bp Feature: gene Location: 3980416-3981237 bp Ori: APH22483.1 Feature: domain Description: tgl Location: 3980419-3981229 bp Feature: domain Description: tgl Location: 398041 9-3981 229 bp Feature: gene Location: 3981234-3982229 bp Feature: gene Location: 3982920-3984746 bp Ori: APH21992.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3982977-3983214 bp Feature: domain Description: RVT_N Location: 3982977-398321 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983277-3983931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983277-3983931 bp Feature: domain Description: GIIM Note: maturase Location: 3983994-3984228 bp Feature: domain Description: GIIM Note: maturase Location: 3983994-3984228 bp Feature: domain Description: HNHc Note: nucleases Location: 3984435-3984600 bp Feature: domain Description: HNHc Note: nucleases Location: 3984435-3984600 bp Feature: gene Location: 3985451-3985750 bp Feature: gene Location: 3986430-3987026 bp Ori: APH21155.1 Feature: domain Description: DUF3862 Location: 3986610-3987021 bp Feature: domain Description: DUF3862 Location: 398661 0-3987021 bp Feature: gene Location: 3993213-3993572 bp Ori: APH21642.1 Feature: domain Description: GIY-YIG_LuxR_like Location: 3993234-3993528 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 3993234-3993528 bp Feature: gene Location: 3993643-3994125 bp Feature: gene Location: 3994421-3996124 bp Ori: APH24498.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3994442-3994601 bp Feature: domain Description: RVT_N Location: 3994442-3994601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994661-3995312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994661 -399531 2 bp Feature: domain Description: GIIM Note: maturase Location: 3995375-3995609 bp Feature: domain Description: GIIM Note: maturase Location: 3995375-3995609 bp Feature: domain Description: McrA Location: 3995708-3996023 bp Feature: domain Description: McrA Location: 3995708-3996023 bp Feature: gene Location: 3996875-3998227 bp Ori: APH21383.1 Feature: domain Description: PcnB Location: 3996914-3998177 bp Feature: domain Description: PcnB Location: 399691 4-39981 77 bp Feature: gene Location: 3998217-3999227 bp Ori: APH22681.1 Feature: domain Description: YcgL Location: 3998280-3999063 bp Feature: domain Description: YcgL Location: 3998280-3999063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RutF (TIGR03615), NimA (COG3467), ABC2_membrane_2 (pfam12679), CcmA (COG4133), TIGR02271 (conserved domain), YsnF (COG3861)
DUF1836 (pfam08876), HD_3 (pfam13023), tgl (PRK03187), DUF3862 (pfam12978), GIY-YIG_LuxR_like (cd10451), McrA (COG4058), PcnB (COG0617), YcgL (pfam05166)